The 2.0 version of rSNPBase

Variant report

Variant rs545672350
Chromosome Location chr6:5723830-5723831
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5707600-5724000 Weak transcription Thymus Thymus
2 chr6:5717400-5729000 Weak transcription Fetal Stomach stomach
3 chr6:5717600-5729000 Weak transcription Fetal Lung lung
4 chr6:5717600-5729600 Weak transcription Brain Substantia Nigra brain
5 chr6:5717800-5725600 Weak transcription Fetal Intestine Small intestine
6 chr6:5718000-5729200 Weak transcription NHEK skin
7 chr6:5722400-5724000 Enhancers Primary monocytes fromperipheralblood blood
8 chr6:5722400-5724600 Enhancers HUES64 Cell Line embryonic stem cell
9 chr6:5722800-5724800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr6:5722800-5724800 Enhancers iPS-18 Cell Line embryonic stem cell
11 chr6:5722800-5724800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
12 chr6:5722800-5725000 Enhancers H1 Cell Line embryonic stem cell
13 chr6:5722800-5725000 Enhancers HUES6 Cell Line embryonic stem cell
14 chr6:5722800-5725000 Enhancers Placenta Placenta
15 chr6:5723000-5724000 Enhancers Primary hematopoietic stem cells blood
16 chr6:5723000-5724000 Weak transcription Fetal Muscle Trunk muscle
17 chr6:5723000-5724200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr6:5723000-5744200 Weak transcription Right Ventricle heart
19 chr6:5723200-5724400 Enhancers Primary hematopoietic stem cells short term culture blood
20 chr6:5723200-5724400 Enhancers Primary Natural Killer cells fromperipheralblood blood
21 chr6:5723200-5725000 Enhancers Fetal Muscle Leg muscle
22 chr6:5723400-5724600 Enhancers H9 Cell Line embryonic stem cell
23 chr6:5723400-5724600 Enhancers Cortex derived primary cultured neurospheres brain
24 chr6:5723600-5724000 Enhancers Rectal Mucosa Donor 29 rectum
25 chr6:5723600-5724000 Weak transcription Spleen Spleen
26 chr6:5723600-5724200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
27 chr6:5723600-5724200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr6:5723600-5724200 Enhancers iPS-20b Cell Line embryonic stem cell
29 chr6:5723600-5724200 Enhancers Primary T helper cells fromperipheralblood blood
30 chr6:5723600-5724200 Enhancers Brain Germinal Matrix brain
31 chr6:5723600-5724200 Enhancers Fetal Thymus thymus
32 chr6:5723600-5724400 Enhancers Primary T cells fromperipheralblood blood
33 chr6:5723600-5724600 Enhancers ES-I3 Cell Line embryonic stem cell
34 chr6:5723600-5724600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr6:5723600-5724600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr6:5723600-5724600 Enhancers HUES48 Cell Line embryonic stem cell
37 chr6:5723600-5724800 Enhancers iPS-15b Cell Line embryonic stem cell
38 chr6:5723600-5724800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr6:5723600-5725000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
40 chr6:5723600-5725200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
41 chr6:5723800-5724000 Enhancers Primary neutrophils fromperipheralblood blood
42 chr6:5723800-5724000 Flanking Active TSS Primary T cells from cord blood blood
43 chr6:5723800-5724000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr6:5723800-5724200 Flanking Active TSS GM12878-XiMat blood
45 chr6:5723800-5724600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr6:5723800-5724600 Enhancers Primary T helper cells PMA-I stimulated --
47 chr6:5723800-5724600 Enhancers NH-A brain
48 chr6:5723800-5724800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr6:5723800-5725000 Flanking Active TSS Primary B cells from cord blood blood
50 chr6:5723800-5725000 Flanking Active TSS Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015