Variant report

Variant	rs545687698
Chromosome Location	chr2:39891932-39891933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr2:39891531-39892067	HL-60	blood:	n/a	n/a
2	E2F6	chr2:39891897-39892587	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
TMEM178A	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873889	chr2:39830183-39950482	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833870	chr2:39837022-40026024	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3411574	chr2:39891873-39894421	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39885600-39893600	Weak transcription	Fetal Brain Male	brain
2	chr2:39888400-39892400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:39888600-39892000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:39888600-39892400	Weak transcription	Brain Angular Gyrus	brain
5	chr2:39889800-39892200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:39890000-39892600	Weak transcription	HSMMtube	muscle
7	chr2:39890400-39892400	Enhancers	Fetal Heart	heart
8	chr2:39891200-39894000	Active TSS	Fetal Brain Female	brain
9	chr2:39891600-39892000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr2:39891600-39892000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr2:39891600-39892000	Weak transcription	HSMM	muscle
12	chr2:39891600-39892600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
13	chr2:39891800-39892000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:39891800-39892000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
15	chr2:39891800-39892000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:39891800-39892200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:39891800-39892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:39891800-39892800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
19	chr2:39891800-39893000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:39891800-39894600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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