Variant report

Variant	rs545690240
Chromosome Location	chr11:58404539-58404540
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv527919	chr11:58403833-58404733	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv528261	chr11:58403833-58404733	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv1050444	chr11:58404467-58434568	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58392000-58406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:58393000-58407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:58393200-58407000	Weak transcription	Thymus	Thymus
4	chr11:58393800-58406200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:58393800-58407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:58394000-58407200	Weak transcription	Left Ventricle	heart
7	chr11:58394000-58407800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:58394600-58407200	Weak transcription	Primary T cells from cord blood	blood
9	chr11:58394600-58407200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:58394800-58407000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:58394800-58408200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:58395200-58407000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:58395200-58407000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:58395600-58407200	Weak transcription	Dnd41	blood
15	chr11:58395800-58407800	Weak transcription	Fetal Thymus	thymus
16	chr11:58396200-58407000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:58402400-58407800	Weak transcription	Fetal Intestine Small	intestine
18	chr11:58403600-58407200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:58404400-58408000	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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