Variant report

Variant	rs545697
Chromosome Location	chr12:63792298-63792299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1144042	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1144205	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1250672	0.95[AFR][1000 genomes]
rs1250675	0.95[AFR][1000 genomes]
rs1250680	0.95[AFR][1000 genomes]
rs1251431	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1251765	0.86[ASN][1000 genomes]
rs1251766	0.87[ASN][1000 genomes]
rs1251767	0.87[ASN][1000 genomes]
rs1251985	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1251986	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1272078	0.86[ASN][1000 genomes]
rs1303184	0.81[AMR][1000 genomes]
rs1581098	0.80[AMR][1000 genomes]
rs1733691	0.86[ASN][1000 genomes]
rs474527	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs474660	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs475046	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs477614	0.95[AFR][1000 genomes]
rs482779	0.81[AMR][1000 genomes]
rs489614	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs501065	0.80[AMR][1000 genomes]
rs512936	0.95[AFR][1000 genomes]
rs517142	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs521964	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs531618	0.81[CHB][hapmap]
rs534038	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs534886	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs534927	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs551668	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs556989	0.81[AMR][1000 genomes]
rs575689	0.81[AMR][1000 genomes]
rs699623	0.95[AFR][1000 genomes]
rs786850	0.81[EUR][1000 genomes]
rs805033	0.85[AFR][1000 genomes]
rs805034	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs878450	0.81[AMR][1000 genomes]
rs936147	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1035736	chr12:63526274-63920372	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541510	chr12:63526274-63920372	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1052866	chr12:63562442-63879794	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541511	chr12:63562442-63879794	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv832439	chr12:63688083-63865226	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044694	chr12:63746069-63920831	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2422401	chr12:63778527-64017057	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63790800-63794000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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