Variant report

Variant	rs545737345
Chromosome Location	chr6:88118403-88118404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88116849..88119599-chr6:88181543..88183591,3	MCF-7	breast:
2	chr6:88118378..88120152-chr6:88120695..88125220,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164414	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv1979464	chr6:88117983-88118500	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3520620	chr6:88118068-88118409	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3520621	chr6:88118081-88118437	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88116800-88118600	Active TSS	Muscle Satellite Cultured Cells	--
2	chr6:88116800-88118800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:88116800-88119000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:88116800-88119000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:88116800-88119000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:88116800-88119000	Active TSS	NHDF-Ad	bronchial
7	chr6:88117000-88118600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:88117000-88118600	Active TSS	Adipose Nuclei	Adipose
9	chr6:88117000-88118600	Active TSS	HSMMtube	muscle
10	chr6:88117000-88118800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:88117000-88118800	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:88117000-88118800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:88117000-88118800	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr6:88117000-88118800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:88117000-88118800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:88117000-88118800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:88117000-88118800	Active TSS	Brain Angular Gyrus	brain
18	chr6:88117000-88118800	Active TSS	Brain Hippocampus Middle	brain
19	chr6:88117000-88118800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:88117000-88118800	Active TSS	Colonic Mucosa	Colon
21	chr6:88117000-88118800	Active TSS	Fetal Brain Male	brain
22	chr6:88117000-88118800	Active TSS	Fetal Stomach	stomach
23	chr6:88117000-88118800	Active TSS	Ovary	ovary
24	chr6:88117000-88118800	Active TSS	Right Atrium	heart
25	chr6:88117000-88118800	Active TSS	Stomach Smooth Muscle	stomach
26	chr6:88117000-88118800	Active TSS	A549	lung
27	chr6:88117000-88119000	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr6:88117000-88119000	Active TSS	H1 Cell Line	embryonic stem cell
29	chr6:88117000-88119000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:88117000-88119000	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:88117000-88119000	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr6:88117000-88119000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:88117000-88119000	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr6:88117000-88119000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:88117000-88119000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:88117000-88119000	Active TSS	Brain Anterior Caudate	brain
37	chr6:88117000-88119000	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr6:88117000-88119000	Active TSS	Rectal Smooth Muscle	rectum
39	chr6:88117000-88119000	Active TSS	K562	blood
40	chr6:88117000-88119000	Active TSS	NH-A	brain
41	chr6:88117000-88119000	Active TSS	NHLF	lung
42	chr6:88117200-88118600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:88117200-88118600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:88117200-88118600	Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr6:88117200-88118600	Active TSS	Left Ventricle	heart
46	chr6:88117200-88118600	Active TSS	Lung	lung
47	chr6:88117200-88118800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr6:88117200-88118800	Active TSS	H9 Cell Line	embryonic stem cell
49	chr6:88117200-88118800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:88117200-88118800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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