Variant report

Variant	rs545739483
Chromosome Location	chr7:65879239-65879240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65686273..65688117-chr7:65877962..65880122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169902	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv981507	chr7:65878773-65886496	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65861800-65880800	Weak transcription	Hela-S3	cervix
2	chr7:65874800-65883600	Weak transcription	HepG2	liver
3	chr7:65875200-65884400	Weak transcription	K562	blood
4	chr7:65876200-65888600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:65877000-65888600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:65878000-65879400	Active TSS	Brain Angular Gyrus	brain
7	chr7:65878000-65879400	Active TSS	Fetal Kidney	kidney
8	chr7:65878000-65879600	Active TSS	Brain Cingulate Gyrus	brain
9	chr7:65878200-65879400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:65878200-65879400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:65878400-65879400	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr7:65878400-65879400	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr7:65878400-65879400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:65878400-65879600	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr7:65878400-65879800	Flanking Active TSS	Placenta	Placenta
16	chr7:65878600-65879400	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr7:65878600-65879400	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr7:65878600-65879400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr7:65878600-65879400	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr7:65878600-65879600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:65878800-65879400	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr7:65878800-65879400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:65878800-65879600	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr7:65879000-65879400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:65879000-65879400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:65879000-65879400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:65879000-65879400	Enhancers	Fetal Heart	heart
28	chr7:65879000-65879600	Enhancers	Primary B cells from peripheral blood	blood
29	chr7:65879000-65879600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr7:65879000-65879800	Enhancers	Spleen	Spleen
31	chr7:65879000-65880200	Weak transcription	NHLF	lung
32	chr7:65879000-65880400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:65879000-65880400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:65879000-65880800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:65879000-65883600	Weak transcription	Stomach Mucosa	stomach
36	chr7:65879000-65890000	Weak transcription	HSMM	muscle
37	chr7:65879000-65891800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:65879000-65893200	Weak transcription	Aorta	Aorta
39	chr7:65879000-65905600	Weak transcription	Lung	lung
40	chr7:65879000-65909000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr7:65879000-65922200	Weak transcription	Small Intestine	intestine
42	chr7:65879200-65879400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr7:65879200-65879400	Enhancers	Primary hematopoietic stem cells	blood
44	chr7:65879200-65879400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr7:65879200-65879400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr7:65879200-65879400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:65879200-65879400	Flanking Active TSS	Colonic Mucosa	Colon
48	chr7:65879200-65879400	Enhancers	Fetal Brain Male	brain
49	chr7:65879200-65879400	Enhancers	Fetal Muscle Leg	muscle
50	chr7:65879200-65879400	Bivalent Enhancer	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links