Variant report

Variant	rs545764599
Chromosome Location	chr3:134624252-134624253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv822262	chr3:134623349-134628638	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134619400-134624600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:134621000-134624400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:134621800-134624600	Enhancers	Fetal Stomach	stomach
4	chr3:134621800-134625000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:134621800-134625200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:134622000-134624400	Enhancers	Brain Anterior Caudate	brain
7	chr3:134622000-134624400	Enhancers	Brain Hippocampus Middle	brain
8	chr3:134622000-134624400	Enhancers	Psoas Muscle	Psoas
9	chr3:134622000-134625800	Enhancers	Brain Germinal Matrix	brain
10	chr3:134622000-134625800	Enhancers	Fetal Brain Male	brain
11	chr3:134622200-134624600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr3:134622400-134624800	Enhancers	Fetal Thymus	thymus
13	chr3:134622600-134624600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:134622600-134624800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr3:134622600-134624800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:134622600-134624800	Enhancers	Fetal Brain Female	brain
17	chr3:134622600-134624800	Flanking Active TSS	GM12878-XiMat	blood
18	chr3:134622800-134624400	Enhancers	Rectal Smooth Muscle	rectum
19	chr3:134622800-134624400	Flanking Active TSS	Dnd41	blood
20	chr3:134622800-134624800	Enhancers	Fetal Muscle Leg	muscle
21	chr3:134623000-134624400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:134623000-134624400	Enhancers	Colon Smooth Muscle	Colon
23	chr3:134623000-134624400	Enhancers	Fetal Muscle Trunk	muscle
24	chr3:134623000-134624400	Enhancers	Right Ventricle	heart
25	chr3:134623000-134624600	Enhancers	Left Ventricle	heart
26	chr3:134623000-134624600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr3:134623200-134624600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:134624000-134624600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr3:134624200-134624600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr3:134624200-134624600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:134624200-134624600	Enhancers	Fetal Heart	heart
32	chr3:134624200-134624800	Enhancers	Brain Inferior Temporal Lobe	brain

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