The 2.0 version of rSNPBase

Variant report

Variant rs545786044
Chromosome Location chr20:16308968-16308969
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16262600-16346200 Weak transcription Gastric stomach
2 chr20:16276400-16348200 Weak transcription Colon Smooth Muscle Colon
3 chr20:16284400-16313600 Weak transcription Primary hematopoietic stem cells blood
4 chr20:16284600-16313600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr20:16285400-16330000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr20:16287000-16315200 Weak transcription Primary T cells fromperipheralblood blood
7 chr20:16288000-16332400 Weak transcription Brain Cingulate Gyrus brain
8 chr20:16288400-16318200 Weak transcription Pancreas Pancrea
9 chr20:16288800-16313800 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr20:16288800-16318600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr20:16289200-16313800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr20:16289400-16348000 Weak transcription Colonic Mucosa Colon
13 chr20:16289800-16323200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr20:16290000-16311200 Weak transcription Primary T cells from cord blood blood
15 chr20:16290000-16313600 Weak transcription Rectal Smooth Muscle rectum
16 chr20:16290400-16313800 Weak transcription Spleen Spleen
17 chr20:16291200-16312800 Weak transcription Aorta Aorta
18 chr20:16291200-16313600 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr20:16291200-16314400 Weak transcription Duodenum Mucosa Duodenum
20 chr20:16291200-16317800 Weak transcription Esophagus oesophagus
21 chr20:16291400-16331000 Weak transcription Brain Inferior Temporal Lobe brain
22 chr20:16292400-16309000 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr20:16293200-16314800 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr20:16294000-16318200 Weak transcription Fetal Stomach stomach
25 chr20:16295600-16313600 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr20:16295600-16318600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr20:16295600-16349000 Weak transcription HepG2 liver
28 chr20:16295800-16315200 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr20:16296200-16315400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr20:16296400-16311600 Weak transcription Stomach Smooth Muscle stomach
31 chr20:16296400-16312200 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr20:16296600-16313800 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr20:16296600-16345200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr20:16296800-16318200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr20:16298600-16313400 Weak transcription Ovary ovary
36 chr20:16298800-16333400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr20:16299200-16311600 Weak transcription Left Ventricle heart
38 chr20:16299200-16313000 Weak transcription Adipose Nuclei Adipose
39 chr20:16301200-16317400 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr20:16301600-16314000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr20:16302800-16313600 Weak transcription Primary monocytes fromperipheralblood blood
42 chr20:16302800-16330600 Weak transcription Brain Substantia Nigra brain
43 chr20:16303000-16313800 Weak transcription Brain Hippocampus Middle brain
44 chr20:16303800-16310800 Weak transcription iPS-20b Cell Line embryonic stem cell
45 chr20:16305200-16313600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr20:16306600-16328400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr20:16307000-16316600 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr20:16307200-16313600 Weak transcription Primary B cells from cord blood blood
49 chr20:16307600-16313800 Weak transcription Fetal Intestine Large intestine
50 chr20:16308000-16309200 Enhancers Fetal Heart heart

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Last update: Aug 31, 2015