Variant report

Variant	rs545794228
Chromosome Location	chr5:124395403-124395404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv4984	chr5:124377028-124401500	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1019740	chr5:124394818-124431220	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124388400-124396400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr5:124388400-124396400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:124389600-124396200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:124390600-124396400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:124391200-124396000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:124391600-124396000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr5:124391600-124396200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:124391600-124398000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:124391800-124396400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:124392000-124395800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:124392200-124395600	Enhancers	HMEC	breast
12	chr5:124392200-124395600	Enhancers	Osteobl	bone
13	chr5:124392200-124396000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr5:124392200-124396400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:124392400-124395600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:124392400-124395600	Enhancers	Fetal Kidney	kidney
17	chr5:124392400-124396000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:124392600-124395600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:124393000-124396000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:124393200-124395600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:124393600-124395600	Enhancers	NHDF-Ad	bronchial
22	chr5:124393800-124395800	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr5:124393800-124395800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr5:124393800-124396000	Enhancers	Fetal Stomach	stomach
25	chr5:124394000-124395600	Enhancers	Hela-S3	cervix
26	chr5:124394200-124395600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr5:124394200-124395800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr5:124394200-124395800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:124394200-124395800	Enhancers	NH-A	brain
30	chr5:124394200-124400400	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:124394400-124396000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:124394400-124400200	Weak transcription	Fetal Brain Male	brain
33	chr5:124394600-124395600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr5:124394600-124395800	Enhancers	Fetal Lung	lung
35	chr5:124394600-124399800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:124394800-124395600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr5:124394800-124395800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr5:124395000-124395600	Enhancers	Fetal Intestine Small	intestine
39	chr5:124395000-124395800	Enhancers	Gastric	stomach
40	chr5:124395000-124396400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr5:124395000-124399400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:124395200-124400000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr5:124395200-124400400	Weak transcription	Brain Anterior Caudate	brain
44	chr5:124395200-124400400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr5:124395200-124400600	Weak transcription	Fetal Muscle Leg	muscle
46	chr5:124395200-124401600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr5:124395400-124395800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr5:124395400-124399200	Weak transcription	Brain Germinal Matrix	brain

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