Variant report

Variant	rs545814649
Chromosome Location	chr8:103054243-103054244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103053043..103055176-chr8:103059742..103061344,2	MCF-7	breast:
2	chr8:103045659..103047816-chr8:103052482..103055042,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891236	chr8:103039917-103070301	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv891237	chr8:103039917-103113701	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv8371	chr8:103052994-103057279	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3479700	chr8:103053849-103056819	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3479699	chr8:103053873-103056780	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3479701	chr8:103053873-103056780	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3479698	chr8:103053876-103056789	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3479697	chr8:103053924-103056780	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv12564	chr8:103053958-103056707	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv438074	chr8:103054099-103055219	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3693001	chr8:103054099-103056517	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv517149	chr8:103054099-103056517	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv818646	chr8:103054099-103056517	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv2421949	chr8:103054099-103056706	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv611820	chr8:103054099-103059848	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103050800-103054400	Weak transcription	Lung	lung
2	chr8:103050800-103054600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:103051400-103054600	Weak transcription	Right Ventricle	heart
4	chr8:103051400-103056200	Weak transcription	Adipose Nuclei	Adipose
5	chr8:103051400-103056600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:103051600-103055800	Weak transcription	Fetal Brain Male	brain
7	chr8:103051600-103064600	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:103053000-103055000	Enhancers	Right Atrium	heart
9	chr8:103053600-103054400	Enhancers	Stomach Smooth Muscle	stomach
10	chr8:103053600-103055000	Enhancers	Left Ventricle	heart
11	chr8:103053600-103057600	Enhancers	Ovary	ovary
12	chr8:103053800-103054600	Weak transcription	Small Intestine	intestine
13	chr8:103053800-103057000	Weak transcription	Psoas Muscle	Psoas
14	chr8:103053800-103072600	Weak transcription	Aorta	Aorta
15	chr8:103054000-103054400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:103054000-103056600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:103054200-103054400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:103054200-103054800	Weak transcription	Fetal Heart	heart
19	chr8:103054200-103055400	Weak transcription	Fetal Kidney	kidney
20	chr8:103054200-103056200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links