Variant report

Variant	rs545829204
Chromosome Location	chr4:22517634-22517635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:138)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:138 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr4:22517341-22518305	IMR90	lung:	n/a	n/a
2	E2F6	chr4:22517594-22518235	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr4:22516823-22518178	A549	lung:	n/a	n/a
4	POLR2A	chr4:22516898-22517725	A549	lung:	n/a	n/a
5	POLR2A	chr4:22517307-22517802	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr4:22517261-22518135	HUVEC	blood vessel:	n/a	n/a
7	POLR2A	chr4:22516558-22518511	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr4:22517593-22518130	PANC-1	pancreas:	n/a	n/a
9	ZBTB7A	chr4:22517451-22517989	ECC-1	luminal epithelium:	n/a	n/a
10	POLR2A	chr4:22517435-22518032	HUVEC	blood vessel:	n/a	n/a
11	MAX	chr4:22517448-22518266	SK-N-SH	brain:	n/a	n/a
12	POLR2A	chr4:22516963-22517729	A549	lung:	n/a	n/a
13	CHD1	chr4:22517423-22517962	GM12878	blood:	n/a	chr4:22517427-22517437
14	YY1	chr4:22516757-22518175	HepG2	liver:	n/a	chr4:22517570-22517581
15	POLR2A	chr4:22516598-22518446	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr4:22515695-22520041	MCF10A-Er-Src	breast:	n/a	n/a
17	YY1	chr4:22517007-22517714	H1-hESC	embryonic stem cell:	n/a	chr4:22517570-22517581
18	POLR2A	chr4:22517399-22517716	U87	brain:	n/a	n/a
19	MYC	chr4:22515742-22518396	MCF10A-Er-Src	breast:	n/a	chr4:22516853-22516862
20	YY1	chr4:22517450-22517749	ECC-1	luminal epithelium:	n/a	chr4:22517570-22517581
21	MAX	chr4:22517458-22518389	HCT-116	colon:	n/a	n/a
22	TAF1	chr4:22517513-22517978	SK-N-SH	brain:	n/a	n/a
23	POLR2A	chr4:22516532-22518483	MCF10A-Er-Src	breast:	n/a	n/a
24	POLR2A	chr4:22517374-22518023	HCT-116	colon:	n/a	n/a
25	POLR2A	chr4:22517428-22517974	HepG2	liver:	n/a	n/a
26	POLR2A	chr4:22517525-22517696	GM12878	blood:	n/a	n/a
27	MYC	chr4:22516829-22517778	MCF-7	breast:	n/a	chr4:22516853-22516862
28	HA-E2F1	chr4:22516751-22518028	Hela-S3	cervix:	n/a	chr4:22517416-22517426 chr4:22517052-22517059
29	YY1	chr4:22517465-22517670	HCT-116	colon:	n/a	chr4:22517570-22517581
30	POLR2A	chr4:22517461-22517888	SK-N-SH	brain:	n/a	n/a
31	HA-E2F1	chr4:22516551-22518396	MCF-7	breast:	n/a	chr4:22517416-22517426 chr4:22517052-22517059
32	TAF1	chr4:22517445-22517986	ECC-1	luminal epithelium:	n/a	n/a
33	POLR2A	chr4:22516862-22518166	A549	lung:	n/a	n/a
34	PAX5	chr4:22517483-22517688	GM12878	blood:	n/a	n/a
35	MAX	chr4:22516547-22518392	A549	lung:	n/a	chr4:22516853-22516862
36	POLR2A	chr4:22517470-22518004	SK-N-SH	brain:	n/a	n/a
37	POLR2A	chr4:22515612-22519946	HepG2	liver:	n/a	n/a
38	BHLHE40	chr4:22517505-22517705	GM12878	blood:	n/a	n/a
39	MXI1	chr4:22517423-22517656	GM12878	blood:	n/a	n/a
40	POLR2A	chr4:22516761-22518082	ECC-1	luminal epithelium:	n/a	n/a
41	E2F6	chr4:22517595-22518432	H1-hESC	embryonic stem cell:	n/a	n/a
42	ZNF263	chr4:22516251-22518354	HEK293-T-REx	kidney:	n/a	chr4:22517820-22517829 chr4:22517644-22517665
43	ZNF143	chr4:22516750-22517731	GM12878	blood:	n/a	chr4:22516881-22516891 chr4:22517411-22517429
44	EBF1	chr4:22517467-22517639	GM12878	blood:	n/a	chr4:22517582-22517593
45	MAX	chr4:22517376-22518339	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTCF	chr4:22517476-22517721	GM12878	blood:	n/a	n/a
47	TCF7L2	chr4:22516620-22518040	HCT-116	colon:	n/a	n/a
48	YY1	chr4:22517358-22517707	SK-N-SH_RA	brain:	n/a	chr4:22517570-22517581
49	MAX	chr4:22516801-22518074	HepG2	liver:	n/a	chr4:22516853-22516862
50	TBP	chr4:22516636-22518285	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:22517623-22517673	K562	blood:	n/a
2	chr4:22517623-22517673	RPTEC	kidney:	n/a
3	chr4:22517623-22517673	LNCaP	prostate:	n/a
4	chr4:22517623-22517673	ProgFib	skin:	n/a
5	chr4:22517623-22517673	AoSMC	blood vessel:	n/a
6	chr4:22517623-22517673	PrEC	prostate:	n/a
7	chr4:22517623-22517673	HRE	kidney:	n/a
8	chr4:22517623-22517673	AG10803	skin:	n/a
9	chr4:22517623-22517673	A549	lung:	n/a
10	chr4:22517623-22517673	HRCEpiC	kidney:	n/a
11	chr4:22517623-22517673	NT2-D1	testis:	n/a
12	chr4:22517623-22517673	AG09309	skin:	n/a
13	chr4:22517623-22517673	AG04450	lung:	fetal
14	chr4:22517623-22517673	HCT-116	colon:	n/a
15	chr4:22517623-22517673	SK-N-SH	brain:	n/a
16	chr4:22517623-22517673	HEEpiC	esophagus:	n/a
17	chr4:22517623-22517673	MCF10A-Er-Src	breast:	n/a
18	chr4:22517623-22517673	GM12878	blood:	n/a
19	chr4:22517623-22517673	ovcar-3	ovarian:	n/a
20	chr4:22517623-22517673	AG09319	gingival:	n/a
21	chr4:22517623-22517673	BE2_C	brain:	n/a
22	chr4:22517623-22517673	MCF-7	breast:	n/a
23	chr4:22517623-22517673	HCPEpiC	choroid plexus:	n/a
24	chr4:22517623-22517673	BJ	skin:	n/a
25	chr4:22517623-22517673	GM06990	blood:	n/a
26	chr4:22517623-22517673	IMR90	lung:	fetal
27	chr4:22517623-22517673	HIPEpiC	eye:	n/a
28	chr4:22517623-22517673	CMK	blood:	n/a
29	chr4:22517623-22517673	SKMC	muscle:	n/a
30	chr4:22517623-22517673	NHDF-neo	bronchial:	n/a
31	chr4:22517623-22517673	Hepatocyte	liver:	n/a
32	chr4:22517623-22517673	H1-hESC	embryonic stem cell:	embryo
33	chr4:22517623-22517673	HRPEpiC	eye:	n/a
34	chr4:22517623-22517673	HNPCEpiC	eye:	n/a
35	chr4:22517623-22517673	HL-60	blood:	n/a
36	chr4:22517623-22517673	GM12891	blood:	n/a
37	chr4:22517623-22517673	Jurkat	blood:	n/a
38	chr4:22517623-22517673	NHBE	bronchial:	n/a
39	chr4:22517623-22517673	PFSK-1	brain:	n/a
40	chr4:22517623-22517673	HUVEC	blood vessel:	n/a
41	chr4:22517623-22517673	Caco-2	colon:	n/a
42	chr4:22517623-22517673	SK-N-SH_RA	brain:	n/a
43	chr4:22517623-22517673	T-47D	breast:	n/a
44	chr4:22517623-22517673	SAEC	small airway:	n/a
45	chr4:22517623-22517673	HPAEpiC	pulmonary alveolar:	n/a
46	chr4:22517623-22517673	GM12892	blood:	n/a
47	chr4:22517623-22517673	NH-A	brain:	n/a
48	chr4:22517623-22517673	U87	brain:	n/a
49	chr4:22517623-22517673	HMEC	breast:	n/a
50	chr4:22517623-22517673	HEK293	kidney:	embryo

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:12076450..12076959-chr4:22517248..22517778,2	HCT-116	colon:
2	chr4:22517567..22518315-chr4:76649363..76650054,2	HCT-116	colon:

No data

Variant related genes	Relation type
GPR125	TF binding region
GPR125	CpG island
ENSG00000138757	Chromatin interaction
ENSG00000256616	Chromatin interaction
ENSG00000138768	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3375345	chr4:22516479-22519027	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3410356	chr4:22516604-22518702	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22515200-22518000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:22515200-22518200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr4:22515400-22518000	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr4:22515400-22518200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr4:22515600-22518000	Active TSS	Fetal Muscle Leg	muscle
6	chr4:22515600-22518200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr4:22515600-22518400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr4:22515600-22518400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:22515600-22518400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:22515600-22518400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:22515800-22517800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:22515800-22518000	Active TSS	H1 Cell Line	embryonic stem cell
13	chr4:22515800-22518000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:22515800-22518000	Active TSS	HMEC	breast
15	chr4:22515800-22518200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:22515800-22518200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:22515800-22518200	Active TSS	Aorta	Aorta
18	chr4:22515800-22518200	Active TSS	Brain Substantia Nigra	brain
19	chr4:22515800-22518400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:22515800-22518400	Active TSS	Psoas Muscle	Psoas
21	chr4:22515800-22518400	Active TSS	HSMM	muscle
22	chr4:22515800-22518800	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr4:22516000-22518000	Active TSS	Fetal Intestine Large	intestine
24	chr4:22516000-22518000	Active TSS	Right Ventricle	heart
25	chr4:22516000-22518000	Active TSS	Hela-S3	cervix
26	chr4:22516000-22518200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr4:22516000-22518200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:22516000-22518200	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr4:22516000-22518200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:22516000-22518200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:22516000-22518200	Active TSS	Fetal Intestine Small	intestine
32	chr4:22516000-22518400	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr4:22516000-22518400	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr4:22516000-22518400	Active TSS	Ovary	ovary
35	chr4:22516000-22518400	Active TSS	Right Atrium	heart
36	chr4:22516000-22518600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:22516200-22517800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr4:22516200-22518000	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr4:22516200-22518000	Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr4:22516200-22518000	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr4:22516200-22518000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:22516200-22518200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:22516200-22518200	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr4:22516200-22518200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:22516200-22518200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:22516200-22518200	Active TSS	Colon Smooth Muscle	Colon
47	chr4:22516200-22518200	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr4:22516200-22518200	Active TSS	Left Ventricle	heart
49	chr4:22516200-22518200	Active TSS	Pancreas	Pancrea
50	chr4:22516200-22518200	Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links