Variant report

Variant	rs545830916
Chromosome Location	chr6:28759319-28759320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28758828..28759555-chr9:136657868..136658790,2	MCF-7	breast:
2	chr6:28757752..28760408-chr6:28765977..28767794,2	K562	blood:
3	chr6:28739775..28742884-chr6:28756307..28759477,3	K562	blood:
4	chr6:28756425..28760621-chr6:28761088..28764506,5	K562	blood:
5	chr6:28686813..28689115-chr6:28758010..28760174,2	K562	blood:
6	chr6:28756573..28759569-chr6:28769791..28772080,4	K562	blood:
7	chr6:28734776..28737188-chr6:28758091..28759724,2	K562	blood:
8	chr6:28755863..28759570-chr6:28911484..28914475,3	K562	blood:
9	chr6:28743173..28744938-chr6:28758816..28760398,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28758200-28761600	Weak transcription	HMEC	breast
2	chr6:28758400-28761600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:28758400-28761800	Weak transcription	HSMMtube	muscle
4	chr6:28758600-28759600	Flanking Active TSS	HepG2	liver
5	chr6:28758800-28761800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:28758800-28761800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:28759000-28759400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr6:28759000-28759400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr6:28759000-28759400	Enhancers	Osteobl	bone
10	chr6:28759000-28759600	Flanking Active TSS	K562	blood
11	chr6:28759200-28759400	Flanking Active TSS	A549	lung
12	chr6:28759200-28759600	Flanking Active TSS	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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