Variant report

Variant	rs545913078
Chromosome Location	chr10:112836284-112836285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:112835780-112836448	H1-hESC	embryonic stem cell:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850
2	REST	chr10:112835739-112837184	H1-neurons	neurons:	n/a	chr10:112836820-112836830 chr10:112837090-112837103 chr10:112836237-112836246
3	MAX	chr10:112835887-112836957	H1-hESC	embryonic stem cell:	n/a	chr10:112836707-112836716
4	REST	chr10:112835976-112836381	GM12878	blood:	n/a	chr10:112836237-112836246
5	ELF1	chr10:112835583-112836490	GM12878	blood:	n/a	n/a
6	SIN3AK20	chr10:112835969-112836347	H1-hESC	embryonic stem cell:	n/a	n/a
7	E2F6	chr10:112835913-112837335	H1-hESC	embryonic stem cell:	n/a	chr10:112836146-112836153 chr10:112836146-112836153 chr10:112837296-112837305 chr10:112837053-112837063 chr10:112837056-112837066 chr10:112837052-112837061 chr10:112836116-112836125 chr10:112836146-112836153
8	RAD21	chr10:112835596-112837208	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
9	SIN3A	chr10:112835862-112837044	H1-hESC	embryonic stem cell:	n/a	chr10:112836164-112836175 chr10:112836796-112836805
10	RAD21	chr10:112835799-112837044	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
11	CTCF	chr10:112835667-112836460	HCT-116	colon:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850
12	RAD21	chr10:112835814-112836330	ECC-1	luminal epithelium:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836036-112836049
13	POLR2A	chr10:112836011-112836539	MCF-7	breast:	n/a	n/a
14	MAX	chr10:112835791-112836334	A549	lung:	n/a	n/a
15	CTCF	chr10:112836160-112836310	GM12868	blood:	n/a	n/a
16	CTCF	chr10:112836260-112836385	GM12892	blood:	n/a	n/a
17	REST	chr10:112835944-112836441	ECC-1	luminal epithelium:	n/a	chr10:112836237-112836246
18	RAD21	chr10:112835775-112836439	A549	lung:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836036-112836049
19	MAX	chr10:112835920-112837039	ECC-1	luminal epithelium:	n/a	chr10:112837013-112837023 chr10:112836707-112836716
20	JUND	chr10:112835907-112836380	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr10:112835561-112837016	SK-N-SH	brain:	n/a	chr10:112836519-112836537 chr10:112836045-112836053 chr10:112836706-112836719 chr10:112836035-112836048 chr10:112836522-112836531 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112836932-112836941 chr10:112835841-112835850 chr10:112836522-112836535
22	MAX	chr10:112835822-112837283	H1-hESC	embryonic stem cell:	n/a	chr10:112837013-112837023 chr10:112836707-112836716
23	RAD21	chr10:112835123-112836993	SK-N-SH	brain:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539 chr10:112835233-112835246
24	MAZ	chr10:112835786-112836330	IMR90	lung:	n/a	n/a
25	RAD21	chr10:112835734-112836726	ECC-1	luminal epithelium:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
26	YY1	chr10:112835951-112836505	ECC-1	luminal epithelium:	n/a	n/a
27	RAD21	chr10:112835723-112836869	MCF-7	breast:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
28	CTCF	chr10:112835770-112836438	HCT-116	colon:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850
29	RAD21	chr10:112835697-112836982	H1-hESC	embryonic stem cell:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
30	MXI1	chr10:112835959-112836333	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr10:112835969-112836367	H1-hESC	embryonic stem cell:	n/a	n/a
32	CTBP2	chr10:112835669-112837158	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr10:112836270-112836374	GM19240	blood:	n/a	n/a
34	CTCF	chr10:112836260-112836410	HEEpiC	esophagus:	n/a	n/a
35	SMC3	chr10:112835621-112837181	SK-N-SH	brain:	n/a	chr10:112836970-112836980 chr10:112836521-112836535 chr10:112836525-112836535 chr10:112836044-112836058
36	E2F6	chr10:112835869-112837416	H1-hESC	embryonic stem cell:	n/a	chr10:112836146-112836153 chr10:112836146-112836153 chr10:112837296-112837305 chr10:112837053-112837063 chr10:112837056-112837066 chr10:112837052-112837061 chr10:112836116-112836125 chr10:112836146-112836153
37	RAD21	chr10:112835761-112836399	MCF-7	breast:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836036-112836049
38	CTCF	chr10:112835786-112836918	A549	lung:	n/a	chr10:112836519-112836537 chr10:112836045-112836053 chr10:112836706-112836719 chr10:112836035-112836048 chr10:112836522-112836531 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850 chr10:112836522-112836535
39	CTCF	chr10:112835781-112836375	MCF-7	breast:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850
40	CTCF	chr10:112835686-112836665	MCF-7	breast:	n/a	chr10:112836519-112836537 chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836522-112836531 chr10:112836044-112836065 chr10:112836042-112836060 chr10:112835841-112835850 chr10:112836522-112836535
41	REST	chr10:112835975-112836391	PANC-1	pancreas:	n/a	chr10:112836237-112836246
42	ZNF263	chr10:112835793-112837079	HEK293-T-REx	kidney:	n/a	chr10:112836280-112836289 chr10:112836296-112836317 chr10:112835991-112836000 chr10:112836534-112836543
43	CTCF	chr10:112835876-112836341	Gliobla	brain:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060
44	CTCF	chr10:112835891-112836421	GM12891	blood:	n/a	chr10:112836045-112836053 chr10:112836035-112836048 chr10:112836044-112836065 chr10:112836042-112836060
45	REST	chr10:112835888-112836321	A549	lung:	n/a	chr10:112836237-112836246
46	MAX	chr10:112835867-112837272	H1-hESC	embryonic stem cell:	n/a	chr10:112837013-112837023 chr10:112836707-112836716
47	TAF1	chr10:112835997-112836325	H1-hESC	embryonic stem cell:	n/a	n/a
48	RAD21	chr10:112836279-112836760	SK-N-SH_RA	brain:	n/a	chr10:112836521-112836535 chr10:112836520-112836539
49	RAD21	chr10:112835717-112836563	HCT-116	colon:	n/a	chr10:112836044-112836053 chr10:112836043-112836062 chr10:112836521-112836535 chr10:112836036-112836049 chr10:112836520-112836539
50	ZNF143	chr10:112835855-112836803	H1-hESC	embryonic stem cell:	n/a	chr10:112836546-112836564

No.	Distal block	Cell Line	Cell type
1	chr10:112835905..112836784-chr10:113041082..113041711,3	MCF-7	breast:
2	chr10:112835556..112836368-chr10:113357671..113358964,3	MCF-7	breast:
3	chr10:112835910..112836421-chr10:113083278..113083990,2	MCF-7	breast:
4	chr10:112835831..112836588-chr10:112967176..112967740,2	MCF-7	breast:

Variant related genes	Relation type
ADRA2A	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv825566	chr10:112830014-112871333	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527400	chr10:112833561-112843085	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv896004	chr10:112834763-112842961	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3321787	chr10:112835962-112840760	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv896005	chr10:112835992-112846298	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112835400-112837000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:112835400-112838000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:112835600-112836400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:112835600-112836600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
5	chr10:112835600-112836800	Enhancers	Spleen	Spleen
6	chr10:112835600-112837000	Flanking Active TSS	Right Ventricle	heart
7	chr10:112835600-112837200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
8	chr10:112835600-112837400	Bivalent/Poised TSS	A549	lung
9	chr10:112835600-112837800	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr10:112835600-112837800	Active TSS	Brain Angular Gyrus	brain
11	chr10:112835600-112837800	Active TSS	HSMMtube	muscle
12	chr10:112835600-112838400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
14	chr10:112835600-112838400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
15	chr10:112835600-112839000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr10:112835600-112839000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
17	chr10:112835800-112836400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:112835800-112836400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
19	chr10:112835800-112836400	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:112835800-112836400	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:112835800-112836400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:112835800-112836400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
23	chr10:112835800-112836400	Flanking Active TSS	Pancreas	Pancrea
24	chr10:112835800-112836400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
25	chr10:112835800-112836400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
26	chr10:112835800-112836400	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
27	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
28	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
30	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
31	chr10:112835800-112836600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
32	chr10:112835800-112836800	Active TSS	H9 Cell Line	embryonic stem cell
33	chr10:112835800-112836800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
34	chr10:112835800-112836800	Active TSS	Psoas Muscle	Psoas
35	chr10:112835800-112836800	Active TSS	Hela-S3	cervix
36	chr10:112835800-112837000	Active TSS	Right Atrium	heart
37	chr10:112835800-112837000	Bivalent/Poised TSS	NHLF	lung
38	chr10:112835800-112837200	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr10:112835800-112837400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
40	chr10:112835800-112837800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:112835800-112837800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
42	chr10:112835800-112837800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:112835800-112837800	Active TSS	Fetal Brain Male	brain
44	chr10:112835800-112837800	Active TSS	Ovary	ovary
45	chr10:112835800-112837800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
46	chr10:112835800-112837800	Flanking Bivalent TSS/Enh	Osteobl	bone
47	chr10:112835800-112838000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:112835800-112838000	Active TSS	HSMM	muscle
49	chr10:112835800-112838200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:112835800-112838200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin

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