Variant report

Variant	rs545919459
Chromosome Location	chr9:103190623-103190624
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:103188255..103190992-chr9:103234182..103236159,2	MCF-7	breast:
2	chr9:103108916..103110922-chr9:103189088..103192439,3	MCF-7	breast:
3	chr9:103108891..103111879-chr9:103188016..103191736,3	K562	blood:
4	chr9:103105076..103107773-chr9:103190189..103193187,3	MCF-7	breast:
5	chr9:103113279..103116752-chr9:103187119..103190910,6	K562	blood:
6	chr9:103187999..103190908-chr9:103233595..103236918,6	MCF-7	breast:
7	chr9:102581117..102583683-chr9:103188604..103191068,4	K562	blood:
8	chr9:103112743..103119519-chr9:103186928..103191502,9	MCF-7	breast:
9	chr9:101982434..101984283-chr9:103190237..103193103,2	MCF-7	breast:
10	chr9:103112020..103116853-chr9:103187928..103193300,12	MCF-7	breast:
11	chr9:103113751..103117482-chr9:103187755..103190910,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000237461	Chromatin interaction
ENSG00000136891	Chromatin interaction
ENSG00000119523	Chromatin interaction
ENSG00000241697	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3443911	chr9:103188156-103191004	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	esv3369267	chr9:103188781-103190679	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103188400-103191000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:103188600-103190800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:103188600-103190800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:103188600-103190800	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr9:103188600-103191000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:103188600-103191000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:103188800-103190800	Active TSS	Aorta	Aorta
8	chr9:103188800-103190800	Active TSS	Right Ventricle	heart
9	chr9:103188800-103191000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:103188800-103191200	Active TSS	HSMMtube	muscle
11	chr9:103188800-103192800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:103189000-103190800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:103189000-103190800	Active TSS	Brain Germinal Matrix	brain
14	chr9:103189000-103191000	Active TSS	HSMM	muscle
15	chr9:103189200-103191000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:103190000-103190800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr9:103190000-103190800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:103190000-103190800	Flanking Active TSS	Fetal Muscle Leg	muscle
19	chr9:103190000-103191000	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr9:103190000-103191400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:103190000-103191800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:103190200-103190800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr9:103190200-103190800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr9:103190200-103190800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr9:103190200-103190800	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr9:103190200-103190800	Flanking Active TSS	Rectal Smooth Muscle	rectum
27	chr9:103190200-103190800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr9:103190200-103190800	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr9:103190200-103190800	Flanking Active TSS	HepG2	liver
30	chr9:103190200-103191200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:103190200-103191200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr9:103190200-103191400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:103190200-103191600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:103190200-103191600	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr9:103190200-103191600	Enhancers	Small Intestine	intestine
36	chr9:103190200-103191800	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr9:103190400-103190800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
38	chr9:103190400-103190800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:103190400-103190800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr9:103190400-103190800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr9:103190400-103190800	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr9:103190400-103190800	Enhancers	Primary B cells from peripheral blood	blood
43	chr9:103190400-103190800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr9:103190400-103190800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr9:103190400-103190800	Enhancers	Liver	Liver
46	chr9:103190400-103190800	Active TSS	Colonic Mucosa	Colon
47	chr9:103190400-103190800	Enhancers	Fetal Intestine Large	intestine
48	chr9:103190400-103190800	Flanking Active TSS	Fetal Stomach	stomach
49	chr9:103190400-103190800	Enhancers	Fetal Thymus	thymus
50	chr9:103190400-103190800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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