Variant report

Variant	rs546015863
Chromosome Location	chr7:66035383-66035384
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66034127..66036034-chr7:66040959..66043847,2	MCF-7	breast:
2	chr7:66027953..66030074-chr7:66033611..66035977,2	K562	blood:

Variant related genes	Relation type
ENSG00000232559	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	esv3377926	chr7:65934493-66051484	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	esv3423847	chr7:65941210-66054107	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
9	nsv970868	chr7:66035219-66056610	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66004400-66052600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:66004800-66037200	Weak transcription	Psoas Muscle	Psoas
3	chr7:66008600-66056000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:66011000-66037000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:66011600-66045000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:66019800-66036600	Weak transcription	HUVEC	blood vessel
7	chr7:66019800-66037400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:66020000-66036600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:66020000-66037400	Weak transcription	Small Intestine	intestine
10	chr7:66021800-66056400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:66022000-66039000	Weak transcription	Aorta	Aorta
12	chr7:66023000-66036400	Weak transcription	Brain Substantia Nigra	brain
13	chr7:66023000-66036600	Weak transcription	Brain Anterior Caudate	brain
14	chr7:66023000-66036600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:66023000-66037400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:66023000-66040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:66023000-66041800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:66023200-66036800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr7:66023200-66043800	Weak transcription	Fetal Heart	heart
20	chr7:66023200-66044400	Weak transcription	Right Atrium	heart
21	chr7:66023200-66048400	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:66023200-66049800	Weak transcription	Stomach Mucosa	stomach
23	chr7:66023200-66055400	Weak transcription	Fetal Brain Male	brain
24	chr7:66023600-66042200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr7:66024000-66036600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:66024000-66036600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:66024000-66037200	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:66024000-66037200	Weak transcription	Colonic Mucosa	Colon
29	chr7:66024000-66037200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr7:66024000-66039000	Weak transcription	Right Ventricle	heart
31	chr7:66024000-66046400	Weak transcription	NHLF	lung
32	chr7:66024200-66036600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:66024200-66037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:66024200-66040400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr7:66024200-66051200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:66024200-66055400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr7:66024200-66055600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:66024400-66036000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:66024400-66036000	Weak transcription	Fetal Brain Female	brain
40	chr7:66024400-66036800	Weak transcription	Esophagus	oesophagus
41	chr7:66024400-66037200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr7:66024400-66038800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:66024400-66051600	Weak transcription	Spleen	Spleen
44	chr7:66025200-66037200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr7:66027600-66042400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr7:66028600-66038800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:66028600-66042000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:66028800-66035600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:66028800-66042000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr7:66028800-66042000	Strong transcription	Primary B cells from peripheral blood	blood

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