Variant report

Variant	rs546029426
Chromosome Location	chr8:19963381-19963382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv890633	chr8:19875100-19985382	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033931	chr8:19954428-19979303	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv525841	chr8:19957089-19970889	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1015598	chr8:19963102-20088510	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv539523	chr8:19963102-20088510	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19956800-19963400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:19960400-19964600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:19960800-19963800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:19961800-19963600	Enhancers	Lung	lung
5	chr8:19962000-19963800	Enhancers	Right Atrium	heart
6	chr8:19962200-19963600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:19962200-19965400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:19962600-19964000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:19962600-19964200	Enhancers	NHDF-Ad	bronchial
10	chr8:19962600-19964400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:19962800-19963600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:19962800-19963600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:19962800-19963600	Enhancers	Aorta	Aorta
14	chr8:19962800-19963600	Enhancers	NHLF	lung
15	chr8:19962800-19963800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr8:19962800-19963800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:19962800-19963800	Enhancers	Left Ventricle	heart
18	chr8:19962800-19963800	Enhancers	Right Ventricle	heart
19	chr8:19962800-19963800	Enhancers	NH-A	brain
20	chr8:19962800-19963800	Flanking Active TSS	Osteobl	bone
21	chr8:19962800-19964000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:19962800-19964200	Enhancers	Hela-S3	cervix
23	chr8:19962800-19964400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:19962800-19964400	Enhancers	HMEC	breast
25	chr8:19962800-19964600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:19962800-19964600	Enhancers	Adipose Nuclei	Adipose
27	chr8:19962800-19964600	Enhancers	Rectal Smooth Muscle	rectum
28	chr8:19962800-19964600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr8:19963000-19963400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:19963000-19963400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr8:19963000-19963400	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr8:19963000-19963400	Flanking Active TSS	Colon Smooth Muscle	Colon
33	chr8:19963000-19963600	Weak transcription	Fetal Lung	lung
34	chr8:19963000-19963600	Enhancers	Placenta	Placenta
35	chr8:19963000-19963800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:19963000-19963800	Enhancers	HSMMtube	muscle
37	chr8:19963000-19963800	Enhancers	HUVEC	blood vessel
38	chr8:19963000-19964600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr8:19963200-19963400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:19963200-19963400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr8:19963200-19963600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:19963200-19963600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:19963200-19963600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr8:19963200-19963600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr8:19963200-19963600	Enhancers	Ovary	ovary
46	chr8:19963200-19963800	Enhancers	Psoas Muscle	Psoas
47	chr8:19963200-19963800	Enhancers	HSMM	muscle
48	chr8:19963200-19963800	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr8:19963200-19963800	Enhancers	NHEK	skin

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