Variant report

Variant	rs546029476
Chromosome Location	chr11:65916585-65916586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65911758..65913479-chr11:65914461..65916927,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	esv1809358	chr11:65916558-65935189	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65895000-65917600	Weak transcription	HSMM	muscle
2	chr11:65901000-65919400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:65905200-65947000	Weak transcription	Fetal Lung	lung
4	chr11:65905400-65939600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:65905800-65924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:65905800-65952800	Weak transcription	Fetal Stomach	stomach
7	chr11:65906000-65960200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:65910000-65939600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:65910400-65918600	Weak transcription	HSMMtube	muscle
10	chr11:65910400-65927000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:65910600-65917400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:65910600-65939600	Weak transcription	NHDF-Ad	bronchial
13	chr11:65910800-65917400	Weak transcription	NHLF	lung
14	chr11:65910800-65917600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:65911000-65918800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:65911000-65924400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:65911000-65924400	Weak transcription	NHEK	skin
18	chr11:65911000-65924600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:65911000-65939400	Weak transcription	NH-A	brain
20	chr11:65911000-65943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:65911800-65916600	Weak transcription	K562	blood
22	chr11:65912800-65917600	Weak transcription	Primary B cells from cord blood	blood
23	chr11:65912800-65924400	Weak transcription	A549	lung
24	chr11:65913000-65918800	Weak transcription	Small Intestine	intestine
25	chr11:65913200-65918400	Weak transcription	Right Atrium	heart
26	chr11:65913200-65918800	Weak transcription	Left Ventricle	heart
27	chr11:65913200-65927000	Weak transcription	Right Ventricle	heart
28	chr11:65913200-65927200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:65913400-65917000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:65913400-65924400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr11:65913400-65924400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:65913400-65929800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr11:65913400-65951000	Weak transcription	Spleen	Spleen
34	chr11:65913800-65916800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:65913800-65917800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:65914000-65924400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:65914200-65917800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:65914200-65939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:65914400-65919800	Weak transcription	Primary T cells from cord blood	blood
40	chr11:65914600-65916600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:65914600-65917200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:65914600-65918200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr11:65914600-65918800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:65914600-65919800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:65914600-65929600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:65914800-65927000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:65915800-65917800	Enhancers	GM12878-XiMat	blood

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