Variant report

Variant	rs546034350
Chromosome Location	chr16:79692722-79692723
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79692293..79694467-chr16:79694561..79696285,3	K562	blood:
2	chr16:79691420..79693874-chr16:79695048..79697845,4	MCF-7	breast:
3	chr16:79682792..79686602-chr16:79687950..79693094,4	MCF-7	breast:
4	chr16:79632623..79634849-chr16:79692598..79695483,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178573	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3341343	chr16:79692468-79692840	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79687800-79692800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr16:79688200-79698400	Weak transcription	Right Atrium	heart
3	chr16:79690200-79694200	Enhancers	Esophagus	oesophagus
4	chr16:79690400-79693200	Enhancers	Fetal Intestine Large	intestine
5	chr16:79690400-79694600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr16:79690600-79693000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr16:79690600-79693600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr16:79691000-79694000	Enhancers	HSMM	muscle
9	chr16:79691200-79692800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:79691200-79698200	Weak transcription	Fetal Lung	lung
11	chr16:79691400-79692800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr16:79691400-79692800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr16:79691400-79692800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr16:79691600-79693000	Enhancers	HSMMtube	muscle
15	chr16:79691600-79693400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr16:79691600-79693400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr16:79691600-79695000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr16:79691800-79692800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:79691800-79692800	Enhancers	Stomach Mucosa	stomach
20	chr16:79691800-79692800	Enhancers	NHLF	lung
21	chr16:79691800-79692800	Enhancers	Osteobl	bone
22	chr16:79691800-79693000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr16:79691800-79693000	Enhancers	NH-A	brain
24	chr16:79691800-79693200	Enhancers	Fetal Brain Male	brain
25	chr16:79692000-79692800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr16:79692000-79692800	Enhancers	Placenta Amnion	Placenta Amnion
27	chr16:79692000-79692800	Bivalent Enhancer	K562	blood
28	chr16:79692000-79692800	Enhancers	NHDF-Ad	bronchial
29	chr16:79692000-79693600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr16:79692000-79693600	Enhancers	Fetal Thymus	thymus
31	chr16:79692400-79692800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr16:79692400-79692800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr16:79692400-79692800	Genic enhancers	Fetal Intestine Small	intestine
34	chr16:79692400-79692800	Flanking Active TSS	HMEC	breast
35	chr16:79692400-79693400	Flanking Active TSS	NHEK	skin
36	chr16:79692400-79694000	Enhancers	Brain Germinal Matrix	brain
37	chr16:79692600-79693400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr16:79692600-79693600	Enhancers	Fetal Muscle Leg	muscle
39	chr16:79692600-79693800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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