Variant report

Variant	rs546044107
Chromosome Location	chr6:30090700-30090701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601476	chr6:30085838-30091311	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv884056	chr6:30089623-30097818	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30082400-30091000	Weak transcription	HepG2	liver
2	chr6:30086200-30092600	Enhancers	Fetal Intestine Small	intestine
3	chr6:30089000-30092600	Enhancers	Fetal Intestine Large	intestine
4	chr6:30089200-30092400	Enhancers	Hela-S3	cervix
5	chr6:30089400-30091000	Enhancers	Stomach Mucosa	stomach
6	chr6:30089400-30092400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:30089400-30092600	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:30089600-30091200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:30089800-30090800	Enhancers	NHDF-Ad	bronchial
10	chr6:30090400-30091200	Weak transcription	Colonic Mucosa	Colon
11	chr6:30090600-30091000	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr6:30090600-30091200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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