Variant report

Variant	rs546065708
Chromosome Location	chr15:76603176-76603177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
2	chr15:76517181..76519721-chr15:76602211..76604425,2	K562	blood:
3	chr15:76577736..76580355-chr15:76602966..76605157,2	MCF-7	breast:
4	chr15:76579019..76580557-chr15:76600815..76603366,2	K562	blood:
5	chr15:76603148..76604121-chr2:97001077..97001691,2	Hela-S3	cervix:
6	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
7	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
8	chr15:76602919..76604847-chr15:77361875..77364736,2	K562	blood:
9	chr15:76584959..76587924-chr15:76602984..76605259,2	K562	blood:
10	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
11	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:
12	chr15:76602967..76603663-chr17:61850570..61851532,2	Hela-S3	cervix:
13	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259514	Chromatin interaction
ENSG00000198231	Chromatin interaction
ENSG00000121152	Chromatin interaction
ENSG00000159556	Chromatin interaction
ENSG00000108588	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000140391	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520069	chr15:76602212-76609181	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76602000-76603200	Flanking Active TSS	Adipose Nuclei	Adipose
2	chr15:76602000-76604000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:76602000-76604000	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr15:76602000-76604200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:76602000-76604200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:76602200-76604000	Active TSS	HSMMtube	muscle
7	chr15:76602200-76604200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:76602200-76604200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:76602200-76604400	Active TSS	Stomach Smooth Muscle	stomach
10	chr15:76602400-76603200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:76602400-76603200	Flanking Active TSS	HUVEC	blood vessel
12	chr15:76602400-76603400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:76602400-76604000	Active TSS	H1 Cell Line	embryonic stem cell
14	chr15:76602400-76604000	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr15:76602400-76604000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:76602400-76604000	Active TSS	A549	lung
17	chr15:76602400-76604200	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr15:76602400-76604200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:76602400-76604400	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr15:76602400-76604400	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr15:76602400-76604400	Active TSS	NHLF	lung
22	chr15:76602600-76603200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr15:76602600-76603200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr15:76602600-76603200	Weak transcription	Spleen	Spleen
25	chr15:76602600-76603200	Flanking Active TSS	NH-A	brain
26	chr15:76602600-76603600	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr15:76602600-76603800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:76602600-76603800	Active TSS	Fetal Brain Male	brain
29	chr15:76602600-76604000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:76602600-76604000	Active TSS	Fetal Heart	heart
31	chr15:76602600-76604000	Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr15:76602600-76604000	Active TSS	NHDF-Ad	bronchial
33	chr15:76602600-76604200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:76602600-76604200	Active TSS	Fetal Intestine Small	intestine
35	chr15:76602600-76604200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr15:76602600-76604200	Active TSS	Fetal Stomach	stomach
37	chr15:76602600-76604200	Active TSS	Lung	lung
38	chr15:76602600-76604200	Active TSS	Ovary	ovary
39	chr15:76602600-76604200	Active TSS	Psoas Muscle	Psoas
40	chr15:76602600-76604200	Active TSS	Right Atrium	heart
41	chr15:76602600-76604200	Active TSS	Right Ventricle	heart
42	chr15:76602600-76604200	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr15:76602600-76604200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr15:76602600-76604400	Active TSS	Fetal Intestine Large	intestine
45	chr15:76602600-76604400	Active TSS	Rectal Smooth Muscle	rectum
46	chr15:76602800-76603200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr15:76602800-76603200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr15:76602800-76603200	Flanking Active TSS	Primary B cells from peripheral blood	blood
49	chr15:76602800-76603200	Flanking Active TSS	Primary T cells from cord blood	blood
50	chr15:76602800-76603200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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