Variant report

Variant	rs546082998
Chromosome Location	chr11:76674228-76674229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3508597	chr11:76671304-76676202	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3508598	chr11:76671304-76676202	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv498761	chr11:76672826-76677823	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv14454	chr11:76672837-76674867	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
3	chr11:76646600-76688000	Weak transcription	HMEC	breast
4	chr11:76647200-76674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:76650600-76681200	Weak transcription	Brain Substantia Nigra	brain
6	chr11:76655800-76681800	Weak transcription	Primary B cells from cord blood	blood
7	chr11:76656200-76677000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:76657000-76674600	Weak transcription	Fetal Stomach	stomach
9	chr11:76657000-76676600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:76657200-76688400	Weak transcription	Gastric	stomach
11	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:76661200-76674600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:76663000-76674600	Weak transcription	Liver	Liver
14	chr11:76665800-76688400	Weak transcription	Right Ventricle	heart
15	chr11:76666800-76677600	Weak transcription	Hela-S3	cervix
16	chr11:76666800-76695400	Weak transcription	NHEK	skin
17	chr11:76667800-76674400	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:76669000-76675200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:76670000-76674400	Weak transcription	A549	lung
20	chr11:76670200-76675200	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr11:76671600-76675400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:76672000-76674800	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:76672200-76674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:76672200-76674600	Weak transcription	Lung	lung
25	chr11:76672200-76674600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:76672200-76675800	Weak transcription	Spleen	Spleen
27	chr11:76672200-76676800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:76672200-76677200	Weak transcription	Ovary	ovary
29	chr11:76672200-76682600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
31	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:76672800-76674400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:76672800-76674600	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:76673000-76675600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:76673000-76689600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:76673200-76675000	Enhancers	Fetal Intestine Large	intestine
37	chr11:76673400-76674400	Enhancers	HepG2	liver
38	chr11:76673400-76674600	Enhancers	Pancreas	Pancrea
39	chr11:76673400-76675000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:76673400-76675200	Enhancers	Fetal Thymus	thymus
41	chr11:76673400-76675200	Enhancers	Stomach Mucosa	stomach
42	chr11:76673400-76676000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:76673400-76676000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
44	chr11:76673600-76674400	Enhancers	Small Intestine	intestine
45	chr11:76673600-76674600	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr11:76673600-76674800	Enhancers	Primary T cells fromperipheralblood	blood
47	chr11:76673600-76675000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
48	chr11:76673600-76675000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:76673600-76675000	Strong transcription	Placenta	Placenta
50	chr11:76673600-76675000	Enhancers	GM12878-XiMat	blood

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