Variant report

Variant	rs546086
Chromosome Location	chr11:104770719-104770720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs516574	0.94[AFR][1000 genomes]
rs548171	1.00[AFR][1000 genomes]
rs559538	1.00[AFR][1000 genomes]
rs577429	1.00[AFR][1000 genomes]
rs622484	1.00[AFR][1000 genomes]
rs626341	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2757474	chr11:104719593-104798545	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759862	chr11:104719593-104798545	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv1040536	chr11:104757419-104781022	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	esv20820	chr11:104757749-104781659	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv556217	chr11:104758035-104781313	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv1040784	chr11:104763797-104855878	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104769000-104772000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr11:104769200-104777600	Weak transcription	Pancreas	Pancrea
3	chr11:104769200-104778200	Weak transcription	Left Ventricle	heart
4	chr11:104769200-104778800	Weak transcription	NHLF	lung
5	chr11:104769200-104786400	Weak transcription	Lung	lung
6	chr11:104769200-104786600	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:104769200-104787800	Weak transcription	Fetal Lung	lung
8	chr11:104769400-104785400	Weak transcription	Psoas Muscle	Psoas
9	chr11:104769400-104786800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:104769600-104785800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:104769600-104786800	Weak transcription	Adipose Nuclei	Adipose
12	chr11:104769600-104788000	Weak transcription	Fetal Stomach	stomach
13	chr11:104769800-104772000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr11:104769800-104777600	Weak transcription	Aorta	Aorta
15	chr11:104770200-104770800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:104770200-104771600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:104770200-104771800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:104770200-104771800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:104770200-104772000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:104770200-104772000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:104770200-104778000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:104770400-104771600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:104770400-104772200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:104770400-104777400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr11:104770400-104786600	Weak transcription	Ovary	ovary

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