Variant report

Variant	rs546087
Chromosome Location	chr6:114230157-114230158
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114225067..114227184-chr6:114227873..114230239,2	K562	blood:

Variant related genes	Relation type
ENSG00000175967	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1407459	0.85[JPT][hapmap]
rs2243356	0.80[JPT][hapmap]
rs2475631	0.85[JPT][hapmap]
rs2499618	0.84[JPT][hapmap]
rs2615513	0.84[EUR][1000 genomes]
rs2810162	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2810163	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs352063	0.85[JPT][hapmap]
rs352093	0.94[JPT][hapmap]
rs352095	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs352096	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs352098	1.00[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs45695	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs471595	0.93[EUR][1000 genomes]
rs486167	1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs498519	0.85[JPT][hapmap]
rs499349	0.91[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs512727	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs514949	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs530433	0.83[JPT][hapmap]
rs530459	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs548148	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs551673	0.96[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs552557	0.96[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs560836	0.95[EUR][1000 genomes]
rs563502	0.96[EUR][1000 genomes]
rs568317	0.96[CEU][hapmap];0.89[TSI][hapmap];0.96[EUR][1000 genomes]
rs580820	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv830779	chr6:114206534-114246099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114225400-114230400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:114225600-114230200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:114225800-114230400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:114225800-114230400	Weak transcription	HUVEC	blood vessel
5	chr6:114225800-114231000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:114226200-114242000	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:114226600-114246000	Weak transcription	Fetal Stomach	stomach
8	chr6:114226800-114240400	Weak transcription	Left Ventricle	heart
9	chr6:114229000-114230600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:114230000-114230200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:114230000-114230400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:114230000-114230400	Enhancers	NHDF-Ad	bronchial
13	chr6:114230000-114230600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:114230000-114230600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:114230000-114230600	Enhancers	Ovary	ovary
16	chr6:114230000-114230600	Enhancers	Osteobl	bone

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