Variant report

Variant	rs546088155
Chromosome Location	chr13:110654394-110654395
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110653031..110654741-chr17:73849649..73852204,2	MCF-7	breast:
2	chr13:110651856..110654487-chr13:110670006..110672793,2	MCF-7	breast:
3	chr13:110436934..110441220-chr13:110649910..110655074,7	MCF-7	breast:
4	chr13:110652695..110654691-chr13:110658148..110659831,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132471	Chromatin interaction
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110649800-110654800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr13:110649800-110655000	Enhancers	Hela-S3	cervix
3	chr13:110650400-110655000	Enhancers	HMEC	breast
4	chr13:110650800-110655400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:110651000-110654400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:110651000-110654800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:110651400-110655000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:110651600-110658000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:110651800-110654600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:110651800-110662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:110652400-110654800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:110652600-110658000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr13:110653000-110654600	Enhancers	NHEK	skin
14	chr13:110653000-110654800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:110653000-110654800	Enhancers	Osteobl	bone
16	chr13:110653000-110655400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr13:110653200-110654400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:110653200-110654600	Enhancers	NH-A	brain
19	chr13:110653200-110654600	Enhancers	NHDF-Ad	bronchial
20	chr13:110653200-110654600	Enhancers	NHLF	lung
21	chr13:110653400-110654400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:110653400-110654800	Enhancers	HSMM	muscle
23	chr13:110653600-110663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:110654000-110654400	Flanking Active TSS	A549	lung
25	chr13:110654000-110664000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr13:110654200-110654600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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