Variant report

Variant	rs546104482
Chromosome Location	chr6:134268097-134268098
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv604701	chr6:134248060-134269657	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3473402	chr6:134267059-134271657	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134266600-134272400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:134266800-134272200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:134267000-134272200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:134267800-134271600	Enhancers	Liver	Liver
5	chr6:134268000-134268200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:134268000-134268200	Enhancers	Gastric	stomach
7	chr6:134268000-134268200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr6:134268000-134268200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr6:134268000-134268600	Enhancers	Fetal Brain Female	brain
10	chr6:134268000-134269000	Enhancers	K562	blood
11	chr6:134268000-134270200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:134268000-134270400	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:134268000-134270400	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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