Variant report

Variant	rs546105419
Chromosome Location	chr9:100757355-100757356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:100757183-100757944	K562	blood:	n/a	n/a
2	POLR2A	chr9:100757255-100757777	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:100755345..100757563-chr9:100771597..100774410,2	MCF-7	breast:
2	chr9:100756332..100760444-chr9:100817600..100819282,3	MCF-7	breast:
3	chr9:100683949..100685611-chr9:100757327..100760260,3	K562	blood:
4	chr9:100756765..100758556-chr9:100774591..100777214,2	MCF-7	breast:

Variant related genes	Relation type
ANP32B	TF binding region
ENSG00000095380	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335186	chr9:100756939-100760935	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100748000-100760400	Weak transcription	Fetal Kidney	kidney
2	chr9:100748000-100760800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:100748000-100767200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:100748400-100761600	Weak transcription	Brain Anterior Caudate	brain
5	chr9:100748600-100757600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:100749000-100757800	Weak transcription	Fetal Stomach	stomach
7	chr9:100749200-100767200	Weak transcription	Esophagus	oesophagus
8	chr9:100750000-100767200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:100750000-100767400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:100750400-100757400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:100750800-100764000	Weak transcription	Fetal Brain Female	brain
12	chr9:100751000-100761800	Weak transcription	Right Atrium	heart
13	chr9:100751000-100764200	Weak transcription	Fetal Brain Male	brain
14	chr9:100751000-100765200	Weak transcription	Aorta	Aorta
15	chr9:100751400-100757600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:100751800-100757600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr9:100752000-100784000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:100752800-100757600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:100752800-100757800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:100752800-100759600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:100753000-100761600	Weak transcription	HSMMtube	muscle
22	chr9:100753000-100767800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:100753000-100768400	Weak transcription	Fetal Heart	heart
24	chr9:100753000-100769000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:100753400-100767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:100753600-100767200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:100754400-100758000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:100754600-100784200	Strong transcription	Dnd41	blood
29	chr9:100754600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:100755200-100759200	Weak transcription	NHLF	lung
31	chr9:100755200-100782200	Strong transcription	HepG2	liver
32	chr9:100755200-100783800	Strong transcription	NHEK	skin
33	chr9:100755400-100757400	Weak transcription	Lung	lung
34	chr9:100755400-100757400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:100755400-100759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:100755400-100759800	Weak transcription	Pancreas	Pancrea
37	chr9:100755400-100759800	Weak transcription	Psoas Muscle	Psoas
38	chr9:100755400-100763800	Weak transcription	Gastric	stomach
39	chr9:100755400-100783000	Weak transcription	Stomach Mucosa	stomach
40	chr9:100755600-100769200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr9:100755600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:100755800-100758000	Genic enhancers	GM12878-XiMat	blood
43	chr9:100755800-100758400	Strong transcription	A549	lung
44	chr9:100755800-100759600	Weak transcription	Brain Angular Gyrus	brain
45	chr9:100755800-100761400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:100755800-100782200	Strong transcription	K562	blood
47	chr9:100756000-100777800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:100756200-100757400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:100756200-100757600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:100756200-100761600	Weak transcription	Ovary	ovary

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