Variant report

Variant	rs546131167
Chromosome Location	chr3:133307037-133307038
allele	-/AA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133307012..133310394-chr3:133313467..133316837,3	K562	blood:
2	chr3:133306574..133308924-chr3:133376358..133378163,2	K562	blood:
3	chr3:96497113..96498617-chr3:133306400..133308634,2	K562	blood:
4	chr3:133305768..133309536-chr3:133310888..133314653,6	MCF-7	breast:
5	chr3:133300058..133302807-chr3:133305783..133309305,4	MCF-7	breast:
6	chr17:57914542..57916822-chr3:133306892..133309172,2	MCF-7	breast:
7	chr3:133291708..133297732-chr3:133303856..133308533,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091527	Chromatin interaction
ENSG00000062716	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967231	chr3:133306231-133309713	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133294600-133308800	Strong transcription	H1 Cell Line	embryonic stem cell
2	chr3:133294800-133309800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr3:133295200-133308400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:133295400-133308800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:133295400-133308800	Strong transcription	Fetal Intestine Large	intestine
6	chr3:133295400-133309200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:133295400-133309200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:133295600-133308800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:133295600-133309200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:133295600-133309200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:133295600-133309400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:133295600-133310400	Strong transcription	Fetal Stomach	stomach
13	chr3:133297600-133308400	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr3:133297600-133308600	Strong transcription	Fetal Muscle Leg	muscle
15	chr3:133297600-133308800	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr3:133297600-133309400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:133297600-133309400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:133297600-133310200	Weak transcription	Right Atrium	heart
19	chr3:133298000-133308800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:133298000-133309000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:133298000-133309000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr3:133298200-133307200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:133298200-133307600	Strong transcription	Osteobl	bone
24	chr3:133298200-133307800	Weak transcription	Fetal Heart	heart
25	chr3:133298200-133308000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:133298200-133308600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:133298200-133308600	Strong transcription	HUVEC	blood vessel
28	chr3:133298200-133308800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:133298200-133308800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:133298200-133308800	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:133298200-133308800	Strong transcription	Dnd41	blood
32	chr3:133298200-133309200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:133298600-133308800	Strong transcription	Thymus	Thymus
34	chr3:133298600-133309000	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr3:133298600-133309400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr3:133299000-133308800	Strong transcription	Placenta	Placenta
37	chr3:133299600-133308600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:133299600-133309200	Strong transcription	Rectal Smooth Muscle	rectum
39	chr3:133300000-133307800	Strong transcription	Hela-S3	cervix
40	chr3:133300000-133307800	Strong transcription	HMEC	breast
41	chr3:133300000-133308000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:133300200-133308600	Strong transcription	Primary B cells from peripheral blood	blood
43	chr3:133300200-133308800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:133300200-133308800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:133300200-133309200	Strong transcription	Fetal Thymus	thymus
46	chr3:133300400-133307200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr3:133300400-133308800	Strong transcription	Primary B cells from cord blood	blood
48	chr3:133300400-133309000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:133300400-133309000	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr3:133300400-133309200	Strong transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links