Variant report

Variant	rs546155477
Chromosome Location	chr6:5692653-5692654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3473790	chr6:5692573-5707035	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3473791	chr6:5692573-5707035	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5672200-5705800	Weak transcription	Thymus	Thymus
2	chr6:5673800-5701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:5673800-5709800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5678000-5709400	Weak transcription	Pancreas	Pancrea
5	chr6:5678200-5694000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:5678400-5693400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:5680600-5695400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:5680800-5695000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:5681800-5695000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:5682200-5693200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:5682400-5695200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:5682400-5695400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:5684600-5695400	Weak transcription	Fetal Stomach	stomach
14	chr6:5684800-5696000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:5684800-5706000	Weak transcription	Ovary	ovary
16	chr6:5685000-5695400	Weak transcription	HSMMtube	muscle
17	chr6:5685000-5698600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:5691400-5698200	Weak transcription	Spleen	Spleen
19	chr6:5692000-5693200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:5692400-5693000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr6:5692600-5695000	Weak transcription	Dnd41	blood

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