Variant report

Variant	rs546174217
Chromosome Location	chr3:78780028-78780029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3404191	chr3:78777462-78781660	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3499836	chr3:78778712-78780710	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78766600-78783000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:78772000-78792200	Weak transcription	HepG2	liver
3	chr3:78774400-78783200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:78777400-78780400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:78777800-78780600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:78778200-78782800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:78778600-78781600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:78778600-78783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:78778800-78780600	Weak transcription	Brain Anterior Caudate	brain
10	chr3:78778800-78783000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:78778800-78783400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:78778800-78785600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:78778800-78787200	Weak transcription	HSMM	muscle
14	chr3:78779000-78782800	Weak transcription	Fetal Lung	lung
15	chr3:78779000-78782800	Weak transcription	Osteobl	bone
16	chr3:78779200-78781600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:78779400-78781600	Weak transcription	Brain Germinal Matrix	brain
18	chr3:78779400-78782200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:78779600-78783200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:78779800-78780400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr3:78779800-78780600	Enhancers	NHDF-Ad	bronchial
22	chr3:78780000-78781000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:78780000-78782800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:78780000-78787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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