Variant report

Variant	rs546197527
Chromosome Location	chr11:4977465-4977466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:4977429-4977479	BE2_C	brain:	n/a
2	chr11:4977429-4977479	HRCEpiC	kidney:	n/a
3	chr11:4977429-4977479	MCF-7	breast:	n/a
4	chr11:4977429-4977479	Caco-2	colon:	n/a
5	chr11:4977429-4977479	GM12892	blood:	n/a
6	chr11:4977429-4977479	AG10803	skin:	n/a
7	chr11:4977429-4977479	MCF10A-Er-Src	breast:	n/a
8	chr11:4977429-4977479	HMEC	breast:	n/a
9	chr11:4977429-4977479	HCF	heart:	n/a
10	chr11:4977429-4977479	LNCaP	prostate:	n/a
11	chr11:4977429-4977479	IMR90	lung:	fetal
12	chr11:4977429-4977479	Hepatocyte	liver:	n/a
13	chr11:4977429-4977479	HepG2	liver:	n/a
14	chr11:4977429-4977479	PANC-1	pancreas:	n/a
15	chr11:4977429-4977479	GM12878	blood:	n/a
16	chr11:4977429-4977479	K562	blood:	n/a
17	chr11:4977429-4977479	GM06990	blood:	n/a
18	chr11:4977429-4977479	H1-hESC	embryonic stem cell:	embryo
19	chr11:4977429-4977479	HIPEpiC	eye:	n/a
20	chr11:4977429-4977479	Jurkat	blood:	n/a
21	chr11:4977429-4977479	PrEC	prostate:	n/a
22	chr11:4977429-4977479	HUVEC	blood vessel:	n/a
23	chr11:4977429-4977479	RPTEC	kidney:	n/a
24	chr11:4977429-4977479	HRE	kidney:	n/a
25	chr11:4977429-4977479	SK-N-SH	brain:	n/a
26	chr11:4977429-4977479	NHBE	bronchial:	n/a
27	chr11:4977429-4977479	SK-N-MC	brain:	n/a
28	chr11:4977429-4977479	HCT-116	colon:	n/a
29	chr11:4977429-4977479	HEK293	kidney:	embryo
30	chr11:4977429-4977479	HPAEpiC	pulmonary alveolar:	n/a
31	chr11:4977429-4977479	GM12891	blood:	n/a
32	chr11:4977429-4977479	T-47D	breast:	n/a
33	chr11:4977429-4977479	HAEpiC	amniotic membrane:	n/a
34	chr11:4977429-4977479	AG09309	skin:	n/a
35	chr11:4977429-4977479	Hela-S3	cervix:	n/a
36	chr11:4977429-4977479	NB4	blood:	n/a
37	chr11:4977429-4977479	SKMC	muscle:	n/a
38	chr11:4977429-4977479	A549	lung:	n/a
39	chr11:4977429-4977479	PFSK-1	brain:	n/a
40	chr11:4977429-4977479	NH-A	brain:	n/a
41	chr11:4977429-4977479	HL-60	blood:	n/a
42	chr11:4977429-4977479	AG04450	lung:	fetal
43	chr11:4977429-4977479	NHDF-neo	bronchial:	n/a
44	chr11:4977429-4977479	ECC-1	luminal epithelium:	n/a
45	chr11:4977429-4977479	AoSMC	blood vessel:	n/a
46	chr11:4977429-4977479	HCPEpiC	choroid plexus:	n/a
47	chr11:4977429-4977479	NT2-D1	testis:	n/a
48	chr11:4977429-4977479	HRPEpiC	eye:	n/a
49	chr11:4977429-4977479	HEEpiC	esophagus:	n/a
50	chr11:4977429-4977479	HNPCEpiC	eye:	n/a

No data

Variant related genes	Relation type
OR51A2	CpG island

Extended variants
information (count: 61 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:61 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv7652	chr11:4946245-4997769	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
5	nsv1054610	chr11:4953844-5004203	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
6	nsv526998	chr11:4954607-5074301	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1045154	chr11:4958462-5032685	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv540937	chr11:4958462-5032685	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1046693	chr11:4958462-5177455	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
10	nsv540938	chr11:4958462-5177455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
11	nsv64	chr11:4959236-4985373	Enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv896918	chr11:4960032-5001570	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
13	nsv1043799	chr11:4961506-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	nsv1046196	chr11:4961506-4995448	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
15	esv2760169	chr11:4961518-5233821	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
16	esv2757419	chr11:4961913-4992282	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
17	nsv1039389	chr11:4962632-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv1054521	chr11:4962933-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
19	nsv1037087	chr11:4963707-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	nsv1050888	chr11:4964103-4987007	Enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	esv3473641	chr11:4965876-4978774	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
22	esv3510133	chr11:4966726-4978024	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
23	esv17688	chr11:4966925-4977889	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
24	nsv1048352	chr11:4967061-4978382	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
25	nsv1052561	chr11:4967061-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
26	nsv1039806	chr11:4967061-4995989	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
27	nsv1041662	chr11:4967061-5001831	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
28	esv1822800	chr11:4967117-4978423	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
29	esv1829172	chr11:4967223-4977473	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
30	nsv8782	chr11:4967251-4979906	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
31	esv3510132	chr11:4967276-4977499	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
32	nsv1041603	chr11:4967364-4978382	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
33	nsv1041643	chr11:4967364-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
34	esv2760399	chr11:4967376-4987007	Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
35	esv1845619	chr11:4967560-4977648	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
36	nsv553195	chr11:4967651-4980681	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
37	nsv1040062	chr11:4968117-4978382	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
38	nsv1049584	chr11:4968117-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
39	nsv1043954	chr11:4968117-4991090	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
40	nsv1046955	chr11:4968117-4992501	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
41	nsv1051927	chr11:4968117-4994984	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
42	nsv1053877	chr11:4968117-4995989	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
43	nsv511477	chr11:4968198-4979689	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
44	nsv553201	chr11:4968198-4980681	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
45	nsv553202	chr11:4968198-4995686	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
46	esv1809389	chr11:4968936-4980681	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
47	esv3514294	chr11:4969206-4977965	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
48	esv3514295	chr11:4969206-4977965	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
49	nsv1047492	chr11:4970231-4982916	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
50	nsv1053139	chr11:4970231-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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