Variant report

Variant	rs546219560
Chromosome Location	chr17:38378032-38378033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38373137..38377221-chr17:38377340..38382604,9	K562	blood:
2	chr14:71374178..71375131-chr17:38377088..38378038,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000100731	Chromatin interaction
ENSG00000171475	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3381533	chr17:38377176-38379374	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3507998	chr17:38377409-38380022	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3507999	chr17:38377409-38380022	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv2430508	chr17:38377416-38378912	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3348129	chr17:38377742-38378680	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3396401	chr17:38377761-38378517	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2372222	chr17:38377770-38378475	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3314691	chr17:38377772-38378526	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3314692	chr17:38377772-38378526	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38376600-38378200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr17:38376600-38378800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:38376600-38380000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:38376600-38380200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:38376600-38380800	Weak transcription	Colon Smooth Muscle	Colon
6	chr17:38376600-38380800	Weak transcription	Fetal Lung	lung
7	chr17:38376600-38389200	Weak transcription	Esophagus	oesophagus
8	chr17:38376600-38389800	Weak transcription	Colonic Mucosa	Colon
9	chr17:38376600-38389800	Weak transcription	Ovary	ovary
10	chr17:38376600-38390400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr17:38376600-38392200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:38376600-38393200	Weak transcription	Fetal Heart	heart
13	chr17:38376600-38400400	Weak transcription	Psoas Muscle	Psoas
14	chr17:38376600-38412400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr17:38376600-38416800	Weak transcription	Aorta	Aorta
16	chr17:38376800-38378600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr17:38376800-38378600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr17:38376800-38379600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr17:38376800-38380200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr17:38376800-38380200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:38376800-38380200	Weak transcription	K562	blood
22	chr17:38376800-38380200	Weak transcription	NH-A	brain
23	chr17:38376800-38380200	Weak transcription	Osteobl	bone
24	chr17:38376800-38380400	Weak transcription	NHLF	lung
25	chr17:38376800-38380600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr17:38376800-38380800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr17:38376800-38380800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr17:38376800-38380800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr17:38376800-38380800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr17:38376800-38380800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr17:38376800-38380800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr17:38376800-38380800	Weak transcription	Right Ventricle	heart
33	chr17:38376800-38380800	Weak transcription	HSMM	muscle
34	chr17:38376800-38380800	Weak transcription	NHDF-Ad	bronchial
35	chr17:38376800-38381000	Weak transcription	Right Atrium	heart
36	chr17:38376800-38381200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr17:38376800-38381800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr17:38376800-38382800	Weak transcription	Fetal Intestine Large	intestine
39	chr17:38376800-38383000	Weak transcription	Fetal Intestine Small	intestine
40	chr17:38376800-38383000	Weak transcription	Thymus	Thymus
41	chr17:38376800-38383800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr17:38376800-38386800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr17:38376800-38387200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr17:38376800-38388600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr17:38376800-38389200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr17:38376800-38389200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr17:38376800-38389200	Weak transcription	HUVEC	blood vessel
48	chr17:38376800-38389600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr17:38376800-38389600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr17:38376800-38390600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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