Variant report

Variant	rs546224020
Chromosome Location	chr4:86750889-86750890
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:86747800-86752600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr4:86749400-86751000	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:86749400-86752600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:86749400-86752800	Weak transcription	Left Ventricle	heart
6	chr4:86749400-86753200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:86749400-86753200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:86749400-86753200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:86749400-86753200	Weak transcription	Gastric	stomach
10	chr4:86749400-86754400	Weak transcription	Right Ventricle	heart
11	chr4:86749400-86758200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:86749400-86761600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
14	chr4:86749600-86753000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:86749600-86753200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:86749600-86753200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:86749600-86754600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:86749600-86761200	Weak transcription	Ovary	ovary
19	chr4:86749600-86763600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:86749800-86751600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:86749800-86752800	Weak transcription	Right Atrium	heart
22	chr4:86749800-86753000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:86749800-86753000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr4:86749800-86753000	Weak transcription	Aorta	Aorta
25	chr4:86749800-86753200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr4:86749800-86758000	Weak transcription	NHLF	lung
27	chr4:86750000-86751200	Weak transcription	Psoas Muscle	Psoas
28	chr4:86750000-86751600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:86750000-86753200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:86750000-86754000	Weak transcription	Adipose Nuclei	Adipose
31	chr4:86750000-86754200	Weak transcription	Fetal Intestine Small	intestine
32	chr4:86750000-86757800	Weak transcription	Fetal Stomach	stomach
33	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr4:86750200-86751000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:86750200-86751000	Weak transcription	Osteobl	bone
36	chr4:86750200-86751800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:86750200-86752800	Weak transcription	Fetal Lung	lung
38	chr4:86750400-86751600	Enhancers	Fetal Heart	heart
39	chr4:86750600-86751000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr4:86750600-86751000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr4:86750600-86751200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:86750600-86751200	Flanking Active TSS	Fetal Kidney	kidney
43	chr4:86750600-86751600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:86750600-86751600	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr4:86750600-86751600	Enhancers	HSMM	muscle
46	chr4:86750600-86751600	Enhancers	NHDF-Ad	bronchial
47	chr4:86750600-86752200	Enhancers	Stomach Mucosa	stomach
48	chr4:86750600-86753200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr4:86750800-86751000	Enhancers	HUVEC	blood vessel
50	chr4:86750800-86751400	Weak transcription	Fetal Muscle Leg	muscle

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