Variant report

Variant	rs546224210
Chromosome Location	chr6:24455015-24455016
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv2763542	chr6:24445131-24520637	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv519552	chr6:24451256-24524704	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv515988	chr6:24454679-24463461	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24421200-24459600	Weak transcription	Spleen	Spleen
2	chr6:24424000-24456600	Weak transcription	Ovary	ovary
3	chr6:24427600-24456800	Weak transcription	Lung	lung
4	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
5	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:24429200-24455600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:24429400-24483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:24432600-24463800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:24437600-24455400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:24437800-24459600	Weak transcription	Left Ventricle	heart
11	chr6:24438000-24464000	Weak transcription	Pancreas	Pancrea
12	chr6:24438200-24455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:24438400-24483200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:24438600-24459800	Weak transcription	Fetal Stomach	stomach
15	chr6:24438800-24469200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:24444000-24458200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:24447200-24470200	Weak transcription	Aorta	Aorta
18	chr6:24447400-24490400	Weak transcription	Brain Anterior Caudate	brain
19	chr6:24448200-24466200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:24448400-24458000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:24448800-24488000	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:24450200-24459400	Weak transcription	Esophagus	oesophagus
23	chr6:24452200-24458400	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:24452400-24458200	Weak transcription	Adipose Nuclei	Adipose
25	chr6:24452600-24466400	Weak transcription	Dnd41	blood
26	chr6:24452800-24458400	Weak transcription	Hela-S3	cervix
27	chr6:24453200-24471000	Strong transcription	Liver	Liver
28	chr6:24454600-24455400	Enhancers	Thymus	Thymus
29	chr6:24454600-24455600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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