Variant report

Variant	rs546259527
Chromosome Location	chr6:37052764-37052765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37040241..37044221-chr6:37049851..37052927,3	K562	blood:
2	chr6:37027099..37030994-chr6:37049896..37053173,4	MCF-7	breast:
3	chr6:37043566..37047908-chr6:37051801..37055072,4	MCF-7	breast:
4	chr6:37027478..37029052-chr6:37051959..37053874,2	MCF-7	breast:
5	chr6:37050093..37053026-chr6:37139819..37142668,2	K562	blood:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv969392	chr6:37052594-37060796	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37045800-37060800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37049600-37052800	Enhancers	Fetal Intestine Large	intestine
3	chr6:37049600-37053200	Enhancers	Fetal Intestine Small	intestine
4	chr6:37050400-37053200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:37050600-37052800	Enhancers	Ovary	ovary
6	chr6:37050800-37052800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:37050800-37054000	Enhancers	Spleen	Spleen
8	chr6:37051200-37052800	Enhancers	Liver	Liver
9	chr6:37051400-37054600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:37051400-37060400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:37051600-37053200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:37051600-37053800	Weak transcription	Lung	lung
13	chr6:37051600-37054000	Enhancers	HepG2	liver
14	chr6:37051600-37060600	Weak transcription	A549	lung
15	chr6:37051600-37063400	Weak transcription	Small Intestine	intestine
16	chr6:37051800-37054000	Enhancers	K562	blood
17	chr6:37051800-37054400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:37051800-37056400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:37051800-37056600	Weak transcription	Fetal Stomach	stomach
20	chr6:37051800-37056600	Weak transcription	NHDF-Ad	bronchial
21	chr6:37051800-37056800	Weak transcription	Stomach Mucosa	stomach
22	chr6:37051800-37059000	Weak transcription	Hela-S3	cervix
23	chr6:37051800-37060600	Weak transcription	Pancreas	Pancrea
24	chr6:37052200-37053600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:37052200-37060600	Weak transcription	Adipose Nuclei	Adipose
26	chr6:37052200-37070000	Weak transcription	Right Atrium	heart
27	chr6:37052400-37053400	Weak transcription	Placenta	Placenta
28	chr6:37052400-37056600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:37052600-37052800	Enhancers	Esophagus	oesophagus
30	chr6:37052600-37052800	Enhancers	Fetal Muscle Leg	muscle
31	chr6:37052600-37054600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr6:37052600-37056200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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