Variant report

Variant	rs546284712
Chromosome Location	chr9:98205148-98205149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98202143..98207025-chr9:98207845..98211987,5	K562	blood:
2	chr9:98187665..98189990-chr9:98203397..98205232,2	MCF-7	breast:
3	chr9:98202595..98206584-chr9:98206995..98209232,3	MCF-7	breast:
4	chr9:98195671..98199206-chr9:98203414..98207469,4	K562	blood:

Variant related genes	Relation type
ENSG00000237857	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv949520	chr9:98204199-98238358	Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98189600-98210800	Weak transcription	Right Atrium	heart
2	chr9:98189800-98206600	Weak transcription	Pancreas	Pancrea
3	chr9:98194800-98206600	Weak transcription	Left Ventricle	heart
4	chr9:98196800-98206600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:98196800-98207000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr9:98197000-98206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:98197000-98206600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:98197000-98206600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:98197000-98207200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:98197200-98206600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:98197200-98206600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:98197200-98207000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:98197200-98207200	Weak transcription	Placenta	Placenta
14	chr9:98197200-98207600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:98197200-98208800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:98197800-98209400	Weak transcription	Fetal Heart	heart
17	chr9:98198000-98206600	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:98198000-98207200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr9:98198000-98207200	Weak transcription	Brain Substantia Nigra	brain
20	chr9:98198000-98207400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr9:98200600-98207200	Weak transcription	HepG2	liver
22	chr9:98200800-98211800	Weak transcription	Fetal Brain Male	brain
23	chr9:98201600-98207000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:98202000-98224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:98202400-98206600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr9:98202800-98207800	Weak transcription	Hela-S3	cervix
27	chr9:98203000-98207200	Weak transcription	HSMM	muscle
28	chr9:98203200-98205200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:98203200-98206600	Weak transcription	Brain Anterior Caudate	brain
30	chr9:98203200-98206600	Weak transcription	Lung	lung
31	chr9:98203200-98206800	Weak transcription	Gastric	stomach
32	chr9:98203200-98207000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:98203200-98207000	Weak transcription	Fetal Brain Female	brain
34	chr9:98203200-98207200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr9:98203200-98207200	Weak transcription	Fetal Kidney	kidney
36	chr9:98203200-98207200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:98203200-98207600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:98203200-98208800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:98203400-98208600	Weak transcription	Colonic Mucosa	Colon
40	chr9:98203600-98205200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr9:98203600-98206600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr9:98203600-98206600	Weak transcription	Esophagus	oesophagus
43	chr9:98203600-98206800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr9:98203600-98207000	Weak transcription	Brain Germinal Matrix	brain
45	chr9:98203600-98207200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr9:98203600-98207600	Weak transcription	Brain Angular Gyrus	brain
47	chr9:98203600-98211200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr9:98203800-98207000	Weak transcription	GM12878-XiMat	blood
49	chr9:98204000-98206600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:98204000-98206600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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