Variant report

Variant	rs546289672
Chromosome Location	chr11:106888078-106888079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3378270	chr11:106887267-106890115	Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3390031	chr11:106887567-106891165	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106885800-106890000	Active TSS	Brain Anterior Caudate	brain
2	chr11:106886400-106888200	Active TSS	Psoas Muscle	Psoas
3	chr11:106886400-106889400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
4	chr11:106886400-106889600	Bivalent/Poised TSS	Left Ventricle	heart
5	chr11:106886400-106890000	Active TSS	Brain Hippocampus Middle	brain
6	chr11:106886400-106890000	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr11:106886400-106890000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:106886800-106888400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:106886800-106888400	Flanking Active TSS	Fetal Lung	lung
10	chr11:106886800-106888400	Active TSS	Right Ventricle	heart
11	chr11:106886800-106889000	Active TSS	Fetal Muscle Trunk	muscle
12	chr11:106886800-106890000	Active TSS	Brain Angular Gyrus	brain
13	chr11:106887000-106888400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
14	chr11:106887200-106888200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
15	chr11:106887200-106889200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
16	chr11:106887400-106890400	Active TSS	Brain Substantia Nigra	brain
17	chr11:106887600-106888200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:106887600-106889400	Active TSS	Fetal Intestine Small	intestine
19	chr11:106887800-106888200	Flanking Active TSS	Brain Cingulate Gyrus	brain
20	chr11:106887800-106888200	Flanking Active TSS	Fetal Heart	heart
21	chr11:106887800-106888400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr11:106887800-106889200	Active TSS	H1 Cell Line	embryonic stem cell
23	chr11:106887800-106889600	Active TSS	H9 Cell Line	embryonic stem cell
24	chr11:106887800-106889600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
25	chr11:106887800-106889600	Active TSS	Fetal Brain Female	brain
26	chr11:106887800-106890000	Active TSS	Ovary	ovary
27	chr11:106887800-106890400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
28	chr11:106888000-106888200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
29	chr11:106888000-106888200	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:106888000-106888200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:106888000-106888200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
32	chr11:106888000-106888200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr11:106888000-106888200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
34	chr11:106888000-106888200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:106888000-106888200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:106888000-106888200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
37	chr11:106888000-106888200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:106888000-106888200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:106888000-106888200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:106888000-106888200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:106888000-106888200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
42	chr11:106888000-106888200	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
43	chr11:106888000-106888200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
44	chr11:106888000-106888200	Enhancers	Gastric	stomach
45	chr11:106888000-106888200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
46	chr11:106888000-106888200	Bivalent Enhancer	A549	lung
47	chr11:106888000-106888200	Bivalent Enhancer	HepG2	liver
48	chr11:106888000-106888200	Flanking Bivalent TSS/Enh	NHDF-Ad	bronchial
49	chr11:106888000-106888200	Flanking Active TSS	NHLF	lung
50	chr11:106888000-106888400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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