The 2.0 version of rSNPBase
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Variant report
Variant
rs546304111
Chromosome Location
chr1:210381543-210381544
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr1:210380217..210382075-chr1:210547188..210549081,2
K562
blood:
2
chr1:210380217..210382028-chr1:210547417..210549081,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000200972
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv1014034
chr1:209759648-210501731
Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site
45 gene(s)
inside rSNPs
diseases
2
nsv526050
chr1:210381257-210386585
Active TSS Enhancers Flanking Active TSS
Chromatin interactive region
3 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links