Variant report

Variant	rs546305821
Chromosome Location	chr11:5080942-5080943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:5080941-5080991	GM19239	blood:	n/a
2	chr11:5080941-5080991	PrEC	prostate:	n/a
3	chr11:5080941-5080991	HRE	kidney:	n/a
4	chr11:5080941-5080991	NT2-D1	testis:	n/a
5	chr11:5080941-5080991	LNCaP	prostate:	n/a
6	chr11:5080941-5080991	HRCEpiC	kidney:	n/a
7	chr11:5080941-5080991	U87	brain:	n/a
8	chr11:5080941-5080991	ovcar-3	ovarian:	n/a
9	chr11:5080941-5080991	AG09319	gingival:	n/a
10	chr11:5080941-5080991	HAEpiC	amniotic membrane:	n/a
11	chr11:5080941-5080991	AG04449	skin:	fetal
12	chr11:5080941-5080991	SAEC	small airway:	n/a
13	chr11:5080941-5080991	PFSK-1	brain:	n/a
14	chr11:5080941-5080991	HCF	heart:	n/a
15	chr11:5080941-5080991	HPAEpiC	pulmonary alveolar:	n/a
16	chr11:5080941-5080991	BE2_C	brain:	n/a
17	chr11:5080941-5080991	PANC-1	pancreas:	n/a
18	chr11:5080941-5080991	RPTEC	kidney:	n/a
19	chr11:5080941-5080991	GM12892	blood:	n/a
20	chr11:5080941-5080991	HEK293	kidney:	embryo
21	chr11:5080941-5080991	T-47D	breast:	n/a
22	chr11:5080941-5080991	NH-A	brain:	n/a
23	chr11:5080941-5080991	NHBE	bronchial:	n/a
24	chr11:5080941-5080991	K562	blood:	n/a
25	chr11:5080941-5080991	HUVEC	blood vessel:	n/a
26	chr11:5080941-5080991	Hela-S3	cervix:	n/a
27	chr11:5080941-5080991	BJ	skin:	n/a
28	chr11:5080941-5080991	GM12878	blood:	n/a
29	chr11:5080941-5080991	SKMC	muscle:	n/a
30	chr11:5080941-5080991	IMR90	lung:	fetal
31	chr11:5080941-5080991	CMK	blood:	n/a
32	chr11:5080941-5080991	Hepatocyte	liver:	n/a
33	chr11:5080941-5080991	HCPEpiC	choroid plexus:	n/a
34	chr11:5080941-5080991	SK-N-MC	brain:	n/a
35	chr11:5080941-5080991	AG04450	lung:	fetal
36	chr11:5080941-5080991	HCM	heart:	n/a
37	chr11:5080941-5080991	HEEpiC	esophagus:	n/a
38	chr11:5080941-5080991	Jurkat	blood:	n/a
39	chr11:5080941-5080991	HIPEpiC	eye:	n/a
40	chr11:5080941-5080991	GM06990	blood:	n/a
41	chr11:5080941-5080991	SK-N-SH_RA	brain:	n/a
42	chr11:5080941-5080991	SK-N-SH	brain:	n/a
43	chr11:5080941-5080991	MCF-7	breast:	n/a
44	chr11:5080941-5080991	HL-60	blood:	n/a
45	chr11:5080941-5080991	A549	lung:	n/a
46	chr11:5080941-5080991	NB4	blood:	n/a
47	chr11:5080941-5080991	NHDF-neo	bronchial:	n/a
48	chr11:5080941-5080991	AoSMC	blood vessel:	n/a
49	chr11:5080941-5080991	HNPCEpiC	eye:	n/a
50	chr11:5080941-5080991	MCF10A-Er-Src	breast:	n/a

No data

Variant related genes	Relation type
OR52E2	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv1046693	chr11:4958462-5177455	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv540938	chr11:4958462-5177455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2760169	chr11:4961518-5233821	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv553219	chr11:5026200-5214413	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
8	nsv896919	chr11:5060941-5095774	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv896920	chr11:5068137-5221825	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
10	nsv896921	chr11:5074301-5097802	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv975827	chr11:5080931-5104221	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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