Variant report

Variant	rs546351917
Chromosome Location	chr7:98741008-98741009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:98738717..98741614-chr7:98773276..98775542,2	K562	blood:
2	chr7:98725464..98728251-chr7:98738859..98741076,3	K562	blood:
3	chr7:98739456..98741292-chr7:98918688..98921036,2	MCF-7	breast:
4	chr7:98666324..98669111-chr7:98738998..98741505,2	MCF-7	breast:
5	chr7:98739982..98741583-chr7:99034501..99036509,2	K562	blood:
6	chr7:98739979..98741519-chr7:99062135..99063958,2	K562	blood:
7	chr7:98678288..98682057-chr7:98738982..98742511,4	MCF-7	breast:
8	chr7:98739614..98743126-chr7:98922770..98926033,5	MCF-7	breast:
9	chr7:98738526..98746153-chr7:98804876..98809686,18	MCF-7	breast:
10	chr7:98740498..98742801-chr7:98868578..98871943,3	MCF-7	breast:
11	chr7:98739038..98741115-chr7:98797135..98798989,2	K562	blood:
12	chr7:98738519..98741248-chr7:98774626..98776239,2	MCF-7	breast:
13	chr7:98739484..98741856-chr7:99035435..99038061,2	K562	blood:
14	chr7:98740238..98742349-chr7:98859373..98862218,2	MCF-7	breast:
15	chr1:212032006..212034997-chr7:98739173..98741161,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000241468	Chromatin interaction
ENSG00000198742	Chromatin interaction
ENSG00000160917	Chromatin interaction
ENSG00000248919	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000185467	Chromatin interaction
ENSG00000002079	Chromatin interaction
ENSG00000241685	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
4	esv1792421	chr7:98737119-98752081	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
5	esv3370738	chr7:98739216-98743614	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
6	esv3348105	chr7:98740041-98742664	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
7	esv3341751	chr7:98740041-98742989	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
8	esv18348	chr7:98740131-98741285	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98736000-98741800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:98738600-98742000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:98738600-98742000	Active TSS	Brain Hippocampus Middle	brain
4	chr7:98738600-98742400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:98738600-98742400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:98738600-98742400	Active TSS	Aorta	Aorta
7	chr7:98738600-98742400	Active TSS	Ovary	ovary
8	chr7:98738800-98742000	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr7:98738800-98742000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:98738800-98742000	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr7:98738800-98742000	Active TSS	HMEC	breast
12	chr7:98738800-98742000	Active TSS	HSMM	muscle
13	chr7:98738800-98742000	Active TSS	HSMMtube	muscle
14	chr7:98738800-98742000	Active TSS	NHDF-Ad	bronchial
15	chr7:98738800-98742200	Active TSS	NHLF	lung
16	chr7:98738800-98742400	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr7:98738800-98742600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:98739000-98742000	Active TSS	NHEK	skin
19	chr7:98739000-98742200	Active TSS	Brain Anterior Caudate	brain
20	chr7:98739000-98742400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr7:98739000-98742600	Active TSS	Rectal Smooth Muscle	rectum
22	chr7:98739200-98742000	Active TSS	HepG2	liver
23	chr7:98739200-98742200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:98739200-98742200	Active TSS	Brain Angular Gyrus	brain
25	chr7:98739200-98742200	Active TSS	Colonic Mucosa	Colon
26	chr7:98739200-98743200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:98739400-98742000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:98739400-98742200	Active TSS	Brain Cingulate Gyrus	brain
29	chr7:98739400-98742400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:98739400-98742400	Active TSS	Esophagus	oesophagus
31	chr7:98739400-98742400	Active TSS	Right Ventricle	heart
32	chr7:98739400-98742600	Active TSS	H9 Cell Line	embryonic stem cell
33	chr7:98739600-98741200	Enhancers	Primary B cells from cord blood	blood
34	chr7:98739600-98742000	Active TSS	Muscle Satellite Cultured Cells	--
35	chr7:98739600-98742000	Active TSS	Osteobl	bone
36	chr7:98739600-98742200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr7:98739600-98742200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:98739600-98742200	Active TSS	Brain Substantia Nigra	brain
39	chr7:98739600-98742400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr7:98739600-98742400	Active TSS	Colon Smooth Muscle	Colon
41	chr7:98739600-98742600	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr7:98739600-98742600	Active TSS	Fetal Intestine Large	intestine
43	chr7:98739600-98742600	Active TSS	Fetal Kidney	kidney
44	chr7:98739800-98742000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:98739800-98742200	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr7:98739800-98742200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:98739800-98742200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:98739800-98742200	Active TSS	Gastric	stomach
49	chr7:98739800-98742600	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr7:98740000-98741800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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