Variant report

Variant	rs546352902
Chromosome Location	chr6:20197422-20197423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:20193176..20194693-chr6:20195772..20197789,2	K562	blood:
2	chr6:20195556..20197935-chr6:20198781..20201333,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029729	chr6:20113226-20235122	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538155	chr6:20113226-20235122	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1033904	chr6:20127596-20210374	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1032899	chr6:20170426-20197881	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv1799840	chr6:20196549-20210374	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:20139600-20201200	Weak transcription	Fetal Lung	lung
2	chr6:20171200-20198600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:20175000-20201800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:20175000-20205200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:20175200-20202000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:20182000-20204400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:20183600-20204200	Weak transcription	Right Atrium	heart
8	chr6:20184000-20198600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:20184200-20198600	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:20184400-20202400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:20184600-20200800	Weak transcription	Hela-S3	cervix
12	chr6:20187200-20199000	Weak transcription	Fetal Stomach	stomach
13	chr6:20187200-20201000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:20187600-20201600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:20187600-20204400	Weak transcription	Lung	lung
16	chr6:20187800-20197600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:20187800-20203000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:20188800-20198800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:20188800-20200600	Weak transcription	Dnd41	blood
20	chr6:20189400-20200200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:20189400-20200400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr6:20192000-20198600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:20192000-20200600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:20192000-20200600	Weak transcription	Pancreas	Pancrea
25	chr6:20192000-20201200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:20192600-20197800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:20192800-20199800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:20193000-20197600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:20193000-20198600	Weak transcription	Colonic Mucosa	Colon
30	chr6:20193000-20209200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:20193200-20197600	Weak transcription	Fetal Heart	heart
32	chr6:20193200-20198600	Weak transcription	Fetal Intestine Large	intestine
33	chr6:20193200-20198600	Weak transcription	Ovary	ovary
34	chr6:20193200-20198600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:20193200-20200600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:20193200-20200800	Weak transcription	K562	blood
37	chr6:20193200-20201200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:20193200-20204200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:20193200-20204200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:20193400-20200800	Weak transcription	Fetal Muscle Leg	muscle
41	chr6:20193800-20197800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:20195600-20198800	Weak transcription	Small Intestine	intestine
43	chr6:20195600-20200800	Weak transcription	Gastric	stomach
44	chr6:20196000-20198600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr6:20196200-20200800	Weak transcription	Right Ventricle	heart
46	chr6:20196400-20198600	Weak transcription	Fetal Intestine Small	intestine
47	chr6:20196400-20200600	Weak transcription	Stomach Mucosa	stomach
48	chr6:20196400-20200800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:20196400-20200800	Weak transcription	Left Ventricle	heart
50	chr6:20197200-20199200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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