Variant report

Variant	rs546355630
Chromosome Location	chr14:67981374-67981375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:67980933..67983898-chr14:67998089..68001326,3	MCF-7	breast:
2	chr14:67954053..67956925-chr14:67980005..67982672,2	MCF-7	breast:
3	chr14:67981257..67983579-chr14:67998739..68001743,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198133	Chromatin interaction
ENSG00000054690	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1320	chr14:67938724-67984157	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3357417	chr14:67980624-67983572	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67979400-67981400	Enhancers	Spleen	Spleen
2	chr14:67979400-67981400	Enhancers	GM12878-XiMat	blood
3	chr14:67979800-67982600	Enhancers	Fetal Brain Male	brain
4	chr14:67980200-67981400	Flanking Active TSS	Fetal Intestine Small	intestine
5	chr14:67980200-67981400	Enhancers	Small Intestine	intestine
6	chr14:67980200-67981600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:67980400-67981400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:67980400-67981400	Flanking Active TSS	Brain Angular Gyrus	brain
9	chr14:67980400-67981400	Flanking Active TSS	Brain Cingulate Gyrus	brain
10	chr14:67980400-67981400	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr14:67980400-67981400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr14:67980400-67981600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr14:67980600-67981400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr14:67980600-67981400	Flanking Active TSS	Fetal Brain Female	brain
15	chr14:67980600-67981400	Enhancers	Fetal Lung	lung
16	chr14:67980600-67981400	Flanking Bivalent TSS/Enh	HepG2	liver
17	chr14:67980600-67981600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr14:67980600-67982600	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr14:67980800-67981400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr14:67980800-67981400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr14:67980800-67981400	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr14:67980800-67981400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:67980800-67981400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr14:67980800-67981400	Flanking Active TSS	Stomach Mucosa	stomach
25	chr14:67980800-67981400	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr14:67980800-67981600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:67980800-67981600	Flanking Active TSS	Primary B cells from peripheral blood	blood
28	chr14:67980800-67981600	Flanking Active TSS	Brain Germinal Matrix	brain
29	chr14:67980800-67981600	Flanking Active TSS	Placenta	Placenta
30	chr14:67980800-67981600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr14:67980800-67981600	Bivalent/Poised TSS	NH-A	brain
32	chr14:67980800-67981800	Flanking Active TSS	Colonic Mucosa	Colon
33	chr14:67980800-67982400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:67980800-67982600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
35	chr14:67980800-67982600	Active TSS	Rectal Smooth Muscle	rectum
36	chr14:67981000-67981400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
37	chr14:67981000-67981400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr14:67981000-67981400	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr14:67981000-67981400	Enhancers	Lung	lung
40	chr14:67981000-67981400	Flanking Active TSS	Pancreas	Pancrea
41	chr14:67981000-67981400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
42	chr14:67981000-67981400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr14:67981000-67981400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr14:67981000-67981600	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:67981000-67981600	Flanking Active TSS	Primary B cells from cord blood	blood
46	chr14:67981000-67981600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr14:67981000-67981600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr14:67981000-67981600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr14:67981000-67981600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:67981000-67981600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin

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