Variant report

Variant	rs546375492
Chromosome Location	chr21:46300395-46300396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:46298853..46300793-chr21:46302963..46305695,2	MCF-7	breast:
2	chr21:46299899..46304790-chr21:46308846..46313230,4	K562	blood:
3	chr21:46298787..46301754-chr21:46366839..46368624,2	K562	blood:
4	chr21:46296431..46298855-chr21:46300114..46303046,3	K562	blood:
5	chr21:46220171..46223743-chr21:46298474..46302902,5	MCF-7	breast:
6	chr21:46296431..46298316-chr21:46299911..46303046,4	K562	blood:
7	chr21:46292144..46295711-chr21:46299536..46302276,5	K562	blood:
8	chr21:46292064..46297590-chr21:46299437..46304733,9	MCF-7	breast:
9	chr21:46220600..46223152-chr21:46298751..46301224,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000236519	Chromatin interaction
ENSG00000160255	Chromatin interaction
ENSG00000183255	Chromatin interaction
ENSG00000184787	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv1062245	chr21:46096964-46332587	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv544478	chr21:46096964-46332587	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv913962	chr21:46223847-46321172	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv913965	chr21:46223847-46321172	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv1058550	chr21:46227163-46317934	Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv913968	chr21:46249752-46301008	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv1060233	chr21:46254075-46323401	Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv1056513	chr21:46254075-46442759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv913969	chr21:46279505-46472929	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv544479	chr21:46280467-46323401	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
12	nsv470907	chr21:46283669-46306161	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv459299	chr21:46283669-46311264	Strong transcription Active TSS Genic enhancers Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
14	nsv459300	chr21:46283669-46311264	Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
15	nsv587814	chr21:46283669-46311264	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
16	nsv470908	chr21:46298869-46335580	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46294800-46300600	Weak transcription	Fetal Kidney	kidney
2	chr21:46295200-46301200	Weak transcription	Pancreas	Pancrea
3	chr21:46295200-46301400	Weak transcription	Lung	lung
4	chr21:46295200-46302600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr21:46295200-46304200	Weak transcription	Esophagus	oesophagus
6	chr21:46295400-46300600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr21:46295600-46300400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr21:46295600-46300600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr21:46295600-46300800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr21:46295600-46300800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr21:46295600-46338800	Weak transcription	Right Atrium	heart
12	chr21:46295800-46300600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr21:46295800-46300600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr21:46295800-46301200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr21:46295800-46301400	Weak transcription	Brain Anterior Caudate	brain
16	chr21:46295800-46303600	Enhancers	Primary B cells from cord blood	blood
17	chr21:46296000-46300400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr21:46296000-46300400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr21:46296000-46301000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr21:46296000-46301000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr21:46296000-46301000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr21:46296000-46301600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr21:46296000-46301600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr21:46296000-46303800	Enhancers	Primary hematopoietic stem cells	blood
25	chr21:46296000-46304600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr21:46296000-46307400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr21:46296400-46300800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr21:46297600-46300400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr21:46297800-46302600	Enhancers	HUVEC	blood vessel
30	chr21:46297800-46302800	Enhancers	Primary B cells from peripheral blood	blood
31	chr21:46298200-46304200	Enhancers	Spleen	Spleen
32	chr21:46298400-46300800	Enhancers	GM12878-XiMat	blood
33	chr21:46298400-46326600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr21:46298800-46300400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr21:46298800-46301200	Weak transcription	Liver	Liver
36	chr21:46299000-46300400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr21:46299000-46300400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr21:46299000-46300600	Weak transcription	NHEK	skin
39	chr21:46299000-46301000	Enhancers	HepG2	liver
40	chr21:46299000-46301400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr21:46299000-46302000	Enhancers	K562	blood
42	chr21:46299200-46300800	Weak transcription	A549	lung
43	chr21:46299200-46301000	Weak transcription	Fetal Intestine Large	intestine
44	chr21:46299400-46301200	Weak transcription	Fetal Intestine Small	intestine
45	chr21:46299600-46300400	Enhancers	Brain Hippocampus Middle	brain
46	chr21:46299600-46300400	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr21:46299600-46302600	Enhancers	Primary T cells from cord blood	blood
48	chr21:46299800-46301000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr21:46299800-46301200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr21:46299800-46302200	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links