Variant report

Variant	rs546376490
Chromosome Location	chr2:233763680-233763681
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233755071..233758000-chr2:233760102..233763754,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066248	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948470	chr2:233166262-233886732	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1005123	chr2:233227729-233920152	Enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv536173	chr2:233227729-233920152	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv834570	chr2:233639160-233805067	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3377192	chr2:233758324-233835472	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3347415	chr2:233761608-233765906	Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3349659	chr2:233762108-233766506	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3352439	chr2:233762108-233766706	Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3412327	chr2:233762308-233766506	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3437356	chr2:233762908-233767406	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233749400-233766000	Weak transcription	A549	lung
2	chr2:233751000-233766000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:233756400-233763800	Weak transcription	Right Atrium	heart
4	chr2:233756600-233766400	Weak transcription	Brain Substantia Nigra	brain
5	chr2:233756800-233765400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:233757000-233765400	Weak transcription	Pancreas	Pancrea
7	chr2:233757000-233766200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:233757000-233766200	Weak transcription	Fetal Brain Female	brain
9	chr2:233757000-233766400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:233757400-233776600	Weak transcription	Brain Angular Gyrus	brain
11	chr2:233758200-233768800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:233759200-233784400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr2:233759400-233765800	Weak transcription	Esophagus	oesophagus
14	chr2:233759800-233766000	Weak transcription	Colonic Mucosa	Colon
15	chr2:233759800-233766400	Weak transcription	HepG2	liver
16	chr2:233761000-233765800	Weak transcription	Brain Anterior Caudate	brain
17	chr2:233762800-233764000	Strong transcription	Duodenum Mucosa	Duodenum
18	chr2:233763200-233764000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:233763200-233764200	Strong transcription	Liver	Liver
20	chr2:233763200-233766200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:233763400-233764000	Genic enhancers	Brain Cingulate Gyrus	brain
22	chr2:233763400-233764000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr2:233763400-233764200	Genic enhancers	Spleen	Spleen
24	chr2:233763600-233763800	Bivalent Enhancer	Fetal Heart	heart
25	chr2:233763600-233763800	Enhancers	Fetal Kidney	kidney
26	chr2:233763600-233763800	Active TSS	Fetal Lung	lung
27	chr2:233763600-233763800	Flanking Active TSS	Right Ventricle	heart
28	chr2:233763600-233764000	Strong transcription	Gastric	stomach
29	chr2:233763600-233764200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr2:233763600-233764200	Enhancers	NHLF	lung
31	chr2:233763600-233764400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:233763600-233765600	Weak transcription	Fetal Intestine Small	intestine
33	chr2:233763600-233766000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links