Variant report

Variant	rs546402724
Chromosome Location	chrX:55115370-55115371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NRF1	chrX:55115138-55115570	SK-N-SH	brain:	n/a	chrX:55115425-55115434 chrX:55115425-55115436 chrX:55115365-55115379 chrX:55115422-55115436 chrX:55115253-55115262

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chrX:55115352-55115402	NH-A	brain:	n/a
2	chrX:55115352-55115402	AG09319	gingival:	n/a
3	chrX:55115370-55115420	SAEC	small airway:	n/a
4	chrX:55115370-55115420	K562	blood:	n/a
5	chrX:55115370-55115420	PFSK-1	brain:	n/a
6	chrX:55115352-55115402	BE2_C	brain:	n/a
7	chrX:55115352-55115402	SK-N-SH	brain:	n/a
8	chrX:55115352-55115402	GM06990	blood:	n/a
9	chrX:55115370-55115420	GM19239	blood:	n/a
10	chrX:55115370-55115420	HCM	heart:	n/a
11	chrX:55115352-55115402	MCF-7	breast:	n/a
12	chrX:55115370-55115420	RPTEC	kidney:	n/a
13	chrX:55115352-55115402	NHDF-neo	bronchial:	n/a
14	chrX:55115352-55115402	HAEpiC	amniotic membrane:	n/a
15	chrX:55115352-55115402	HCPEpiC	choroid plexus:	n/a
16	chrX:55115352-55115402	RPTEC	kidney:	n/a
17	chrX:55115370-55115420	GM12891	blood:	n/a
18	chrX:55115370-55115420	HMEC	breast:	n/a
19	chrX:55115352-55115402	NHBE	bronchial:	n/a
20	chrX:55115352-55115402	GM12892	blood:	n/a
21	chrX:55115370-55115420	A549	lung:	n/a
22	chrX:55115370-55115420	GM06990	blood:	n/a
23	chrX:55115370-55115420	AG04450	lung:	fetal
24	chrX:55115352-55115402	HEEpiC	esophagus:	n/a
25	chrX:55115352-55115402	GM12878	blood:	n/a
26	chrX:55115370-55115420	NH-A	brain:	n/a
27	chrX:55115352-55115402	CMK	blood:	n/a
28	chrX:55115370-55115420	NHBE	bronchial:	n/a
29	chrX:55115352-55115402	GM19239	blood:	n/a
30	chrX:55115352-55115402	HRPEpiC	eye:	n/a
31	chrX:55115352-55115402	HMEC	breast:	n/a
32	chrX:55115352-55115402	HNPCEpiC	eye:	n/a
33	chrX:55115370-55115420	T-47D	breast:	n/a
34	chrX:55115352-55115402	BJ	skin:	n/a
35	chrX:55115370-55115420	ProgFib	skin:	n/a
36	chrX:55115370-55115420	HCPEpiC	choroid plexus:	n/a
37	chrX:55115370-55115420	NB4	blood:	n/a
38	chrX:55115352-55115402	HPAEpiC	pulmonary alveolar:	n/a
39	chrX:55115370-55115420	ECC-1	luminal epithelium:	n/a
40	chrX:55115370-55115420	HRPEpiC	eye:	n/a
41	chrX:55115352-55115402	HCF	heart:	n/a
42	chrX:55115370-55115420	U87	brain:	n/a
43	chrX:55115352-55115402	H1-hESC	embryonic stem cell:	embryo
44	chrX:55115352-55115402	HIPEpiC	eye:	n/a
45	chrX:55115352-55115402	HRE	kidney:	n/a
46	chrX:55115370-55115420	SK-N-SH_RA	brain:	n/a
47	chrX:55115370-55115420	HCF	heart:	n/a
48	chrX:55115352-55115402	Caco-2	colon:	n/a
49	chrX:55115370-55115420	HRE	kidney:	n/a
50	chrX:55115352-55115402	Jurkat	blood:	n/a

No data

Variant related genes	Relation type
PAGE2	TF binding region
PAGE2	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19730	chrX:55086753-55121905	Enhancers Bivalent Enhancer	TF binding region CpG island	3 gene(s)	inside rSNPs	n/a
2	esv3345340	chrX:55105625-55119598	Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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