Variant report

Variant	rs546415647
Chromosome Location	chr10:93170647-93170648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93168063..93170852-chr10:93390602..93395151,5	MCF-7	breast:
2	chr10:93169232..93170758-chr10:93223754..93225469,2	MCF-7	breast:
3	chr10:93170094..93170949-chr12:49110549..49111245,2	Hela-S3	cervix:
4	chr10:93168839..93171584-chr10:93557037..93559095,2	K562	blood:

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000119938	Chromatin interaction
ENSG00000107854	Chromatin interaction
ENSG00000271385	Chromatin interaction
ENSG00000129315	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3341572	chr10:93168997-93171545	Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	esv3438487	chr10:93169572-93170820	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93168400-93170800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:93168600-93171000	Active TSS	Colon Smooth Muscle	Colon
3	chr10:93168600-93171000	Active TSS	Fetal Intestine Large	intestine
4	chr10:93168600-93171200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:93168600-93171400	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr10:93168600-93171400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:93168600-93171400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:93168600-93171400	Active TSS	A549	lung
9	chr10:93168600-93171600	Active TSS	Fetal Brain Female	brain
10	chr10:93168800-93170800	Active TSS	Brain Substantia Nigra	brain
11	chr10:93168800-93170800	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr10:93168800-93170800	Active TSS	Fetal Intestine Small	intestine
13	chr10:93168800-93170800	Active TSS	Rectal Smooth Muscle	rectum
14	chr10:93168800-93171000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr10:93168800-93171000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:93168800-93171000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:93168800-93171000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:93168800-93171000	Active TSS	Duodenum Mucosa	Duodenum
19	chr10:93168800-93171000	ZNF genes & repeats	Fetal Brain Male	brain
20	chr10:93168800-93171000	Active TSS	Placenta	Placenta
21	chr10:93168800-93171000	Active TSS	Left Ventricle	heart
22	chr10:93168800-93171000	Active TSS	Hela-S3	cervix
23	chr10:93168800-93171000	Active TSS	HSMMtube	muscle
24	chr10:93168800-93171200	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr10:93168800-93171200	Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr10:93168800-93171200	Active TSS	Brain Cingulate Gyrus	brain
27	chr10:93168800-93171200	Active TSS	Fetal Lung	lung
28	chr10:93168800-93171200	Active TSS	Right Ventricle	heart
29	chr10:93168800-93171200	Active TSS	NHLF	lung
30	chr10:93168800-93171400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:93168800-93171400	Active TSS	Fetal Stomach	stomach
32	chr10:93168800-93171400	Active TSS	Stomach Smooth Muscle	stomach
33	chr10:93168800-93171600	Active TSS	Psoas Muscle	Psoas
34	chr10:93168800-93171600	Active TSS	K562	blood
35	chr10:93168800-93171800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:93168800-93171800	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr10:93168800-93171800	Active TSS	Brain Hippocampus Middle	brain
38	chr10:93168800-93171800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:93168800-93172000	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr10:93168800-93172600	Active TSS	Aorta	Aorta
41	chr10:93168800-93172600	Active TSS	Brain Anterior Caudate	brain
42	chr10:93169000-93170800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr10:93169000-93170800	Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr10:93169000-93170800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:93169000-93170800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:93169000-93170800	Active TSS	Gastric	stomach
47	chr10:93169000-93170800	Active TSS	Placenta Amnion	Placenta Amnion
48	chr10:93169000-93170800	Active TSS	Stomach Mucosa	stomach
49	chr10:93169000-93170800	Bivalent/Poised TSS	HepG2	liver
50	chr10:93169000-93171000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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