Variant report

Variant	rs546427791
Chromosome Location	chr11:63955175-63955176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63683951..63686895-chr11:63953660..63955644,2	MCF-7	breast:
2	chr11:63888646..63891541-chr11:63955037..63956555,2	MCF-7	breast:
3	chr11:63929801..63939249-chr11:63945151..63958671,77	MCF-7	breast:
4	chr11:63951654..63956341-chr11:63991514..63996131,9	MCF-7	breast:
5	chr11:63949228..63955854-chr11:64049902..64053814,7	MCF-7	breast:
6	chr11:63954703..63956620-chr11:63982830..63984542,2	MCF-7	breast:
7	chr11:63955085..63958830-chr11:63958900..63961430,4	MCF-7	breast:
8	chr11:63931311..63936745-chr11:63945647..63958123,49	MCF-7	breast:
9	chr11:63951371..63956321-chr11:64011600..64016157,10	MCF-7	breast:
10	chr11:63951667..63955297-chr11:64041322..64044678,4	MCF-7	breast:
11	chr11:63951359..63955952-chr11:63973161..63976481,4	MCF-7	breast:
12	chr11:63951070..63956024-chr11:64006485..64011246,10	MCF-7	breast:
13	chr11:63950774..63958537-chr11:64070493..64074690,13	MCF-7	breast:
14	chr11:63951087..63956474-chr11:63963164..63967847,7	MCF-7	breast:
15	chr11:63952607..63955696-chr11:64083637..64087133,4	K562	blood:
16	chr11:63753400..63755949-chr11:63951622..63955787,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173153	Chromatin interaction
ENSG00000149781	Chromatin interaction
ENSG00000126432	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000167770	Chromatin interaction
ENSG00000173457	Chromatin interaction
ENSG00000149761	Chromatin interaction
ENSG00000133315	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000168439	Chromatin interaction
ENSG00000256940	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000173113	Chromatin interaction
ENSG00000149743	Chromatin interaction
ENSG00000002330	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv832185	chr11:63819946-63963532	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	89 gene(s)	inside rSNPs	diseases
6	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
7	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
8	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
9	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv897663	chr11:63910153-63962152	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	n/a
11	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
12	nsv468592	chr11:63924446-64042997	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
13	nsv555184	chr11:63924446-64042997	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
14	nsv897665	chr11:63927695-64026144	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
15	nsv897666	chr11:63929493-64026144	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	155 gene(s)	inside rSNPs	diseases
16	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
17	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
18	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
19	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
20	nsv468595	chr11:63953121-64027888	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
21	nsv555187	chr11:63953121-64027888	Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	146 gene(s)	inside rSNPs	diseases
22	nsv972037	chr11:63954439-63956243	Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63951200-63955200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr11:63952000-63955200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:63952400-63955200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:63952400-63955400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr11:63952600-63955200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:63952800-63955200	Active TSS	Rectal Smooth Muscle	rectum
7	chr11:63952800-63955200	Active TSS	Right Ventricle	heart
8	chr11:63952800-63955200	Active TSS	HSMM	muscle
9	chr11:63952800-63956000	Active TSS	GM12878-XiMat	blood
10	chr11:63954000-63955200	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr11:63954200-63955200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
12	chr11:63954200-63955200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr11:63954200-63955200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:63954200-63955200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:63954200-63955200	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr11:63954200-63955200	Flanking Active TSS	Fetal Brain Female	brain
17	chr11:63954200-63955200	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
18	chr11:63954200-63955200	Flanking Active TSS	Fetal Thymus	thymus
19	chr11:63954200-63955200	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr11:63954200-63955200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr11:63954200-63955600	Transcr. at gene 5' and 3'	Dnd41	blood
22	chr11:63954400-63955200	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr11:63954400-63955200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr11:63954400-63955200	Flanking Active TSS	NHEK	skin
25	chr11:63954400-63955400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr11:63954400-63955400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:63954400-63955400	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr11:63954600-63955200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:63954600-63955200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr11:63954600-63955200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
31	chr11:63954600-63955200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:63954600-63955200	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr11:63954600-63955200	Flanking Active TSS	Brain Angular Gyrus	brain
34	chr11:63954600-63955200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr11:63954600-63955200	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr11:63954600-63955200	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
37	chr11:63954600-63955200	Flanking Active TSS	Ovary	ovary
38	chr11:63954600-63955200	Transcr. at gene 5' and 3'	A549	lung
39	chr11:63954600-63955200	Active TSS	HepG2	liver
40	chr11:63954600-63955200	Flanking Active TSS	HMEC	breast
41	chr11:63954600-63955200	Flanking Active TSS	HUVEC	blood vessel
42	chr11:63954600-63955200	Flanking Active TSS	NH-A	brain
43	chr11:63954600-63955400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:63954600-63955400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr11:63954600-63955400	Enhancers	Small Intestine	intestine
46	chr11:63954600-63955400	Transcr. at gene 5' and 3'	K562	blood
47	chr11:63954600-63955800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr11:63954600-63957400	Enhancers	Spleen	Spleen
49	chr11:63954600-63960000	Weak transcription	Gastric	stomach
50	chr11:63954600-63967400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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