Variant report

Variant	rs546429581
Chromosome Location	chr1:172616996-172616997
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172615321..172617267-chr1:172618144..172620944,2	MCF-7	breast:
2	chr1:172615017..172617201-chr1:172680481..172683033,2	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373034	chr1:172616706-172617140	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172608800-172624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:172613000-172617200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr1:172613200-172620200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:172613200-172620200	Weak transcription	HMEC	breast
5	chr1:172613600-172623400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:172613800-172623400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:172615000-172617000	Enhancers	Fetal Thymus	thymus
8	chr1:172615200-172617000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr1:172615400-172617400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:172615400-172617600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:172615600-172617200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:172615600-172617400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:172615600-172617600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:172615600-172617600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr1:172615800-172617200	Enhancers	Primary T cells from cord blood	blood
16	chr1:172615800-172618400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr1:172615800-172618600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:172616200-172617600	Enhancers	Osteobl	bone
19	chr1:172616600-172617800	Enhancers	Dnd41	blood
20	chr1:172616800-172620000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:172616800-172623600	Weak transcription	NH-A	brain
22	chr1:172616800-172627400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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