Variant report

Variant	rs546445056
Chromosome Location	chr2:153206156-153206157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693434	chr2:152998467-153208713	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2436407	chr2:153204888-153206437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153193800-153211000	Weak transcription	HSMMtube	muscle
2	chr2:153194000-153206600	Weak transcription	Pancreas	Pancrea
3	chr2:153194200-153224400	Weak transcription	Aorta	Aorta
4	chr2:153194600-153206200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:153194600-153206400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:153194600-153206400	Weak transcription	Lung	lung
7	chr2:153194600-153206600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr2:153194600-153210400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:153194600-153210400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:153194600-153214600	Weak transcription	Gastric	stomach
11	chr2:153196000-153224800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:153196600-153211800	Weak transcription	Small Intestine	intestine
13	chr2:153197000-153207200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:153198000-153206200	Weak transcription	Fetal Brain Male	brain
15	chr2:153198000-153206200	Genic enhancers	HepG2	liver
16	chr2:153198000-153207400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:153198200-153214000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr2:153198600-153214400	Weak transcription	Right Atrium	heart
19	chr2:153199400-153212200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr2:153199800-153211800	Weak transcription	Fetal Kidney	kidney
21	chr2:153200400-153211800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:153200400-153215200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr2:153200600-153210400	Weak transcription	Ovary	ovary
24	chr2:153200600-153225600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:153200800-153209200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:153200800-153210000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr2:153200800-153210400	Weak transcription	NHDF-Ad	bronchial
28	chr2:153200800-153210600	Weak transcription	Psoas Muscle	Psoas
29	chr2:153200800-153212600	Weak transcription	Fetal Intestine Large	intestine
30	chr2:153200800-153215800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr2:153200800-153222000	Weak transcription	Placenta	Placenta
32	chr2:153200800-153225800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:153201400-153206200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr2:153201600-153208400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:153201600-153216000	Weak transcription	Fetal Lung	lung
36	chr2:153202000-153206400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr2:153202200-153206200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr2:153202400-153211000	Weak transcription	NHEK	skin
39	chr2:153202400-153219800	Weak transcription	Hela-S3	cervix
40	chr2:153202400-153225600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr2:153203000-153206800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr2:153203000-153223800	Weak transcription	Fetal Stomach	stomach
43	chr2:153203000-153233000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr2:153203200-153206600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:153203200-153207200	Weak transcription	Fetal Intestine Small	intestine
46	chr2:153203600-153206800	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr2:153203600-153207000	Enhancers	Brain Angular Gyrus	brain
48	chr2:153203600-153207000	Enhancers	Brain Cingulate Gyrus	brain
49	chr2:153203600-153207200	Enhancers	Brain Anterior Caudate	brain
50	chr2:153204400-153207200	Enhancers	Brain Substantia Nigra	brain

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