Variant report

Variant	rs546462474
Chromosome Location	chr7:103629915-103629916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103628555..103630772-chr7:103847007..103849982,2	K562	blood:

Variant related genes	Relation type
ENSG00000164815	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424622	chr7:103628741-103631589	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3328063	chr7:103628966-103631164	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103628600-103630800	Active TSS	K562	blood
2	chr7:103628800-103630000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:103628800-103631000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:103629000-103630600	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr7:103629000-103630800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr7:103629000-103630800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:103629000-103631000	Active TSS	Brain Anterior Caudate	brain
8	chr7:103629000-103631000	Bivalent/Poised TSS	Fetal Stomach	stomach
9	chr7:103629000-103631000	Bivalent/Poised TSS	NHLF	lung
10	chr7:103629000-103631200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
11	chr7:103629000-103631200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
12	chr7:103629000-103631200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:103629000-103631400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr7:103629000-103631400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
15	chr7:103629200-103630800	Bivalent/Poised TSS	Osteobl	bone
16	chr7:103629200-103631000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:103629200-103631200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
18	chr7:103629200-103631200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:103629200-103631200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:103629200-103631200	Active TSS	Brain Substantia Nigra	brain
21	chr7:103629200-103631400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr7:103629400-103630000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:103629400-103630000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:103629400-103630000	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
25	chr7:103629400-103630200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:103629400-103630400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:103629400-103630400	Bivalent Enhancer	Placenta	Placenta
28	chr7:103629400-103630800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:103629400-103631000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:103629400-103631000	Bivalent/Poised TSS	Colonic Mucosa	Colon
31	chr7:103629400-103631000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
32	chr7:103629400-103631000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
33	chr7:103629400-103631000	Active TSS	Rectal Smooth Muscle	rectum
34	chr7:103629400-103631000	Bivalent/Poised TSS	HSMM	muscle
35	chr7:103629400-103631200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:103629400-103631200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:103629400-103632200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
38	chr7:103629600-103630000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr7:103629600-103630000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:103629600-103630000	Flanking Bivalent TSS/Enh	Left Ventricle	heart
41	chr7:103629600-103630000	Flanking Active TSS	Psoas Muscle	Psoas
42	chr7:103629600-103630000	Flanking Bivalent TSS/Enh	Right Ventricle	heart
43	chr7:103629600-103630000	Flanking Bivalent TSS/Enh	HMEC	breast
44	chr7:103629600-103630400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:103629600-103630600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:103629600-103630600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
47	chr7:103629600-103630600	Bivalent/Poised TSS	Thymus	Thymus
48	chr7:103629600-103630800	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr7:103629600-103630800	Active TSS	Stomach Smooth Muscle	stomach
50	chr7:103629600-103630800	Active TSS	HepG2	liver

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