Variant report

Variant	rs546466790
Chromosome Location	chr9:100999081-100999082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100997333..100999921-chr9:101015854..101018462,2	MCF-7	breast:
2	chr9:100991719..100993859-chr9:100997810..101000501,3	K562	blood:

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv1810342	chr9:100995758-101006339	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
6	esv3481700	chr9:100998431-101003029	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
7	esv3504400	chr9:100998987-101003473	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100955800-101003200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:100961400-101001400	Weak transcription	Right Atrium	heart
3	chr9:100968600-101010400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:100968800-101011000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr9:100969400-101004800	Weak transcription	Brain Germinal Matrix	brain
6	chr9:100970200-101001600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:100974800-101010600	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:100980200-101010200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:100981800-101010400	Weak transcription	Fetal Thymus	thymus
10	chr9:100982800-101004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:100983000-101007200	Weak transcription	Fetal Brain Male	brain
12	chr9:100983400-101006200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:100985800-101002800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:100986000-101006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:100989600-101006400	Weak transcription	Psoas Muscle	Psoas
16	chr9:100989600-101016000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:100991400-101006200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr9:100991400-101006200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:100991400-101006400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr9:100991400-101010600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:100991400-101015400	Weak transcription	Brain Anterior Caudate	brain
22	chr9:100991600-101003600	Weak transcription	Colonic Mucosa	Colon
23	chr9:100991800-101011400	Weak transcription	Right Ventricle	heart
24	chr9:100992200-101003000	Weak transcription	Primary B cells from cord blood	blood
25	chr9:100992200-101012800	Weak transcription	Brain Substantia Nigra	brain
26	chr9:100992200-101016000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:100992800-101006200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:100993200-101010200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:100993400-101012600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:100993600-101006000	Weak transcription	Stomach Mucosa	stomach
31	chr9:100993600-101010400	Weak transcription	Left Ventricle	heart
32	chr9:100994600-101003000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:100995000-101016600	Weak transcription	Brain Angular Gyrus	brain
34	chr9:100995200-101006400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:100995200-101010200	Weak transcription	NHDF-Ad	bronchial
36	chr9:100995400-100999600	Strong transcription	HMEC	breast
37	chr9:100995400-101010400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:100995600-101000000	Strong transcription	NHEK	skin
39	chr9:100995800-100999400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:100995800-100999400	Strong transcription	HSMM	muscle
41	chr9:100995800-100999800	Enhancers	K562	blood
42	chr9:100995800-101001000	Enhancers	Fetal Intestine Large	intestine
43	chr9:100995800-101002600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr9:100995800-101003200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:100995800-101003400	Weak transcription	Hela-S3	cervix
46	chr9:100995800-101006200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr9:100995800-101006200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:100995800-101010400	Weak transcription	Adipose Nuclei	Adipose
49	chr9:100995800-101011200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr9:100996000-100999200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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